LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal15g1592	ATGGATCCACCGATCAGCGGCGGAGGCGGTGACGGCGCCGCCAATTCATCGGCGCCATCTCCGGCTCCGATGGCAAACCCGAACGCGCCACCGCCGTTCCTGAGCAAGACGTATGAGATGGTGGATGAAGGTTCAACGGATTCGATAGTTTCATGGAGCGCAACGAATAACAGCTTCGTGGTTTGGAATCCACCAGAGTTTGCCAGAGATCTCTTGCCAAAGCACTTCAAGCACAACAATTTCTCCAGCTTTGTTCGTCAGTTAAACACTTATGGTTTCAGGAAAGTAGATCCAGATCGCTGGGAATTTGCAAATGAGGGATTTTTGAGGGGTCAGAAGCACCTGCTTAAGAGTATAACTCGCCGAAAACCTGCCCATGGTCATAATCATCAACAGACACGGCAATCACATGGACAGAGCTCATCAGTAGGCGCATGTGTCGAAGTTGGGAAGTTTGGACTTGAGGAAGAGGTTGAGATTCTTAAGAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAAGTTGAGGCATCAACAACAGGCTACTGATAGTCAGCTTCAGACAATGGTTAAGTGCTTTCAGGGAATGGAGCAACGACATCAACACATGATCTCATTCCTTGCGAAGGCTGTCCAGAACCCTGGGTTCTTTGCTCAATTCGTACAACAGAAAAATGAGAGTAACAGGCGTTTAGCTGATGCTAACAAAAAACGTCGGCTCAAGCAGGAAGGTATTGCTGAGATGGAACATTCCACTGCTTCTGATGGCCAGATTGTTAAATATCAACCTCGGCTGAATGAAGCAGAAAAAGCAATACTAAGGCAGATCATGAAATTGGATACTTCAGACAGTAGTAACCCTGATAATTACTTGATTGGTGATGGCTCATCATCATTCAGTGCTATCGACCGGGGAAGCTCTTTGAGCCGAACTTCTGGAGTAACTCTTCAAGAGGTCCCTCCAGCTATATTGCAGTCTTCTCACACTCCAGCTGCAATAGGAAATCAAGAGCATGCCCTCACAAAAGTTAAATATGAACATGTATCTTCTCCTCAAGTTGCAGCCTGTGAAAATGGTACAAAAGCTCAATACCCTGAAATAAACGTTTTGGTTGCAACGGCCGAGGATCCCTCCATCACTGTTTCTCAATCAGATGCAATCTTGCCTGATCTTTCTCCAATACCAGATATAGCGACCGGATGCATTCTTGATACTCCTGACGAAAATTACATGGCACCCGACACGAGCGGTGAGGGATATATCGATGCTACTTCACTAGGAGTGAATGGAACATTTCCCATTGATTTTGATAGTATATCACCTGAAGCAGACATTGATGAGCTGTTTAGAAATCCTTTATTTTGGGATGATATTGTGGAAACTCCAGTGGCAGAGGATATTGATATAAACATTGATGAATTGCTGAAGGACAATCAGCTGCACCCAACAGAAAATGGATGGGACAAATCTCAATATATGGACCACCTTACAGAACGAATGGGACTTCTTTCTCCTGATACAAAAGGAGTTTGA	1533	0.4501	MDPPISGGGGDGAANSSAPSPAPMANPNAPPPFLSKTYEMVDEGSTDSIVSWSATNNSFVVWNPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSITRRKPAHGHNHQQTRQSHGQSSSVGACVEVGKFGLEEEVEILKRDKNVLMQELVKLRHQQQATDSQLQTMVKCFQGMEQRHQHMISFLAKAVQNPGFFAQFVQQKNESNRRLADANKKRRLKQEGIAEMEHSTASDGQIVKYQPRLNEAEKAILRQIMKLDTSDSSNPDNYLIGDGSSSFSAIDRGSSLSRTSGVTLQEVPPAILQSSHTPAAIGNQEHALTKVKYEHVSSPQVAACENGTKAQYPEINVLVATAEDPSITVSQSDAILPDLSPIPDIATGCILDTPDENYMAPDTSGEGYIDATSLGVNGTFPIDFDSISPEADIDELFRNPLFWDDIVETPVAEDIDINIDELLKDNQLHPTENGWDKSQYMDHLTERMGLLSPDTKGV	510

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal15g1592	510	ProSitePatterns	HSF-type DNA-binding domain signature.	72	96	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal15g1592	510	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	7	496	IPR027725	-
	Lal15g1592	510	Coils	Coil	151	178	-	-
	Lal15g1592	510	Pfam	HSF-type DNA-binding	33	122	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal15g1592	510	PRINTS	Heat shock factor (HSF) domain signature	33	56	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal15g1592	510	PRINTS	Heat shock factor (HSF) domain signature	71	83	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal15g1592	510	PRINTS	Heat shock factor (HSF) domain signature	84	96	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal15g1592	510	SUPERFAMILY	"Winged helix" DNA-binding domain	28	122	IPR036390	-
	Lal15g1592	510	Gene3D	-	26	123	IPR036388	-
	Lal15g1592	510	MobiDBLite	consensus disorder prediction	1	32	-	-
	Lal15g1592	510	MobiDBLite	consensus disorder prediction	122	141	-	-
	Lal15g1592	510	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-1	7	496	-	-
	Lal15g1592	510	SMART	hsfneu3	29	122	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal15g1592	Lal-Chr15	17806775	17810149	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal15g1592	6	507	HSF	AT1G32330	50.784	8.89e-163	468

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Lal15g1592		HSF_DNA-bind	8.7e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal15g1592	K09419		-	gmx:732544	713.375