Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1584 ATGGATTTTGTTGTGTATAGAGAGATTGATTTTGAAGACCCTTTTTATGTTTTTGAGGATTCCACTAATGAAAAGGAGAGGCCATGCAACAAGGTGGTTATTGGGCAGGGGAGAGGTTTTGAGACCCATTTTGCTTCTTCTTCCGAATTCGAAATCACTGCCTGGCTTGTCAAGATAATGGATCCTGGTCGCTACGGACTGCGTCAAGGCTGGGATGATAACAACAGCGCTCCTGAGGGTTATGCTGCGGTCCATGAGCCAAATTTTCGGGTTGGAGGTTCTTATGATGAAAGGCGGTTTATAGATGAAAGATATCCAAGGGATGCTGAATACCGGAGAAATAGTTTCCATCGTGACATTTTGGATAGGGAGGCCTATCTGCCACCAGGATCTGCTGTTGGTCAGTGGAGTCAGTCCAAACGGAGAGGTTACGATGAAGATTATCCACTCGACAAGGAATCTAGACGTTTTCAGAGGCCTTATCATGAATCATATAATCAGGTTGATGCTTTTGGGGATCGTGAGATTGACACATACCCAGAACGTGATAAGTTTCAGGATGGCTATGCCAGCATTGATAACTATGGTGATCGGGGATATGATAAACCTGCCAGGTTTGCAGGGCATGACCGCGATGATTATGATTATGATGATTATGGCTACAAATCCCGCCTTTCTCATCATCGTAGGGAGGATAGCCATGAGAAGGATTATGATCATGGTCGCCATAGTTATGATTCTGATTATGAAAGAGGTGGTAGAAGAGATAATAATCGGAAGCAGCGTGAATCCCGTGATCGGGAACGTGATAAAAGAGATCTTAGTCGGGAAAAGGATTTGAGTCCACATAGGAGGCATGAGCGTTCTCGTTCCCGTTCTCGGTCACGGTCCAAATCCAATTCCCATTCCCTTTCCCGTTCCCAGTCTCGTGGTTATGATTATGATGATCATCCAAGATCGAAGTCACCTCGAAGTCGAAGCCATGGCCGAAGTTATCGAGAAGACAGCTATGTTGAGAGTCGATATGATAGAACTGAAAGACGTAGGGATCGTGATGACAAACATCAGCGTGAACATTATTCTGTGGCCAATTATCTTACTATTGCTGGAAGATTTGATGTAGCCCCATCTGCAACTATTGTTGTTAAAGGTCTTTCACAGAAGACCACTGAAGAAGATCTATACCAAATCCTTGCGGAATGGGGTCCCCTTCGTCATGTCCGTGTTATAAAGGAGAGAAATTCTGGCATCTCTCGTGGATTTGCATTTATTGATTTTCCTTATGTGGGAGCTGCACAAGGAATGATGGAAAAACTAGGGGAAGATGGTCTTGTTGTGGATGGCAGAAAGCTTTTCTTTGAATACAGTAGTAAGCCAACTGGAGGTCCAGGTCCAGATGGAGCTATAAAATCAGGTCATAATCATAAGAGCATTACATTACCATCTGATTGGATCTGCACTATATGTGGCTACATCAACTTTGCACGTCGGACTTCCTGCTACCAGTGTAATGATCCACGAACAGAGGATGCTCCTGCAGCAGATATTTCATCATCAAATTCAACTGCCTTAGGAAAGAAAGGTTTGGAGGCAGGTCCGACTCATGTTTTGGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGGGATGCTCCGCTATGAGTTTTCCAAACATGCTCCTATTAAGGATCTGCGTCTTGTCAGGGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTCACTCGGTGGAAGATGCTACCAAAGCTCTTGCGGCAACAAATGGAACAACCCTTGAGAGGAATGGGCAAATTCTAAGAGTAGCATATGCAAAAAGTATCATGGGTCCTGGATCAGGAGCTTCCCAATCGAGCAGTCTTGCAGCTGCTGCCATTGAGGCTGCAACATTTTCTCAACAAAAAACGGTTGATGCATTATTGAAATTTGAAAATGAGTTCTACTTTGACAAACAGCTCCTAGGTGCTTTTCCTTTCCCAGTGTGTTGGGGAGTTTCTCTGTATTACGATACTGTGGGATGGGCTCCAAAAGAATATAATCCAGATGACAAACAATCTGCTGGTCCAGAGCAAACTGGCACAGAAGTTGGTGCTCCACAATCAGGCTTTGTTTGGGATGAAGCATCGGGTTATTACTATGATGCTGCTTCTGGGTTTTACTATGATGGGAACAATGGTCTGTATTATGATGGTAATAATGGGATTTGGTATTCATATGACAATCAAACTCAGCAGTACATCCCTTGCACTGACCAAAATCAGAATAAAACAGCTAATAACCTGTCTGAACCGTCCAAAGCATCTGATGGTTCCGGCACTAAAAAGGTGGTGATTTCTGCGACAGCAACTACCGTTGCATCAATTGAGAAGCCAGCTTCGTTGGCAGATGCTGTCCAGGTTGCAGCAGCAGCTGCTTTAGCTGCAGAGAAGAAAGAAAAAGAAAAAGCAAAGGAGATAAAACTTGCCTCAAAAAGCAGTATTCTGGCAAACAAGAAAAAAATGAACAATGTGTTGACAATGTGGAAGCAGAGGAGCCATGAGGGGCAGACTACTCGAGTGGCTCTGGAAGATAATCAACTCTCTGTTTCAGCTGATGATAAATATTCTTCAGGATATTCTTCAAAGAATAAGTTAAAAAATGAGACTATAGCAAGGGAAAGTAATGCATCATCTACTTTGGGAATTCACACAAGTGTTACCCAGGCTGTTGCTTTGGATCCTCAGCCTCGGCCAGTTAGTAATAGCCTCGGGGGCACTTTGATGGGGGTTATAAGGGGCTCAGGAAGAGGGGTTGTTAAATCAGATGCTTATTTGGGTCCTGCAGCTGTCGCACCATCTATGTCAGGTTCTTTAGCAAATGTTGATGCACAGACAATTTCTCCTCCCTTTAGAACAGATGTCTCTGCCTTAAGTTCACACACACCATCTGTGGCTTCTATAAGTGGCAGAAGAAGGTTTTCAGAAATGCCCCATTCTGCTTCAACTTACAAGGAACAATCTCAAACAACCTACAGGGATCGTGCAGCTGAGAGGAGAAGTTTGTATGGCTCGTCATCTTCAGTTGGGAATGATATGTCTGACCTTGAAATTGGGGGTTCAAATCGAGAATTTACATCGAGGAAGGGTGATCCGATGCCTTTCCCTCCCGGGGTTGGTGGAGGACGTGTGGTTGGAGATGTCAACCTTGATACTTTTGAGGTGATTACGGCTGACAAAGCAATTGATGAAAACAATGTTGGCAACCGGATGCTTCGCAACATGGGATGGCAAGAAGGCTTGGAAGTAGAGCTCGACATAGTCATTTGGTTTTTTCGATCTATTTCCAGCATCTTCAAATTTCCTATTTACTGTGCTAGTAATTTAATCCTAGATCTAGAAAATATTTTCCCCAACCTGAAGTTAAAGGGTGACCCTATGCATGAAACTCTCATAAACTGGGGCCTAAGGAGGATAAATGTATACGGTCTTACCCTTGCAAGCGTAGAGGGTGTTTCTTGGCGACTGAGAAGCAACCTTACCATGCGCCAAGGCTCACACTCTGTATTTGATATCACAAAACCCATAGGCGAAACAGTTAGAGTTCAACGCTTTGGACTTGGAAAGGATGGAAGTGGAATGGTAGAGCCTGTCCAGGCACAAGCCATGGAAAACAGAGCAGGACTTGGGAGTCAGCAGAAGAAGTTGGATCCTAGCCTCGAGGTGCAGGCAGGGGATAGTTATAAGATGCTTATTCATAAAAAAGCACTTGCCAGATTTCGGGAAATGTAA 3792 0.4404 MDFVVYREIDFEDPFYVFEDSTNEKERPCNKVVIGQGRGFETHFASSSEFEITAWLVKIMDPGRYGLRQGWDDNNSAPEGYAAVHEPNFRVGGSYDERRFIDERYPRDAEYRRNSFHRDILDREAYLPPGSAVGQWSQSKRRGYDEDYPLDKESRRFQRPYHESYNQVDAFGDREIDTYPERDKFQDGYASIDNYGDRGYDKPARFAGHDRDDYDYDDYGYKSRLSHHRREDSHEKDYDHGRHSYDSDYERGGRRDNNRKQRESRDRERDKRDLSREKDLSPHRRHERSRSRSRSRSKSNSHSLSRSQSRGYDYDDHPRSKSPRSRSHGRSYREDSYVESRYDRTERRRDRDDKHQREHYSVANYLTIAGRFDVAPSATIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPYVGAAQGMMEKLGEDGLVVDGRKLFFEYSSKPTGGPGPDGAIKSGHNHKSITLPSDWICTICGYINFARRTSCYQCNDPRTEDAPAADISSSNSTALGKKGLEAGPTHVLVVRGLDENADEGMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFHSVEDATKALAATNGTTLERNGQILRVAYAKSIMGPGSGASQSSSLAAAAIEAATFSQQKTVDALLKFENEFYFDKQLLGAFPFPVCWGVSLYYDTVGWAPKEYNPDDKQSAGPEQTGTEVGAPQSGFVWDEASGYYYDAASGFYYDGNNGLYYDGNNGIWYSYDNQTQQYIPCTDQNQNKTANNLSEPSKASDGSGTKKVVISATATTVASIEKPASLADAVQVAAAAALAAEKKEKEKAKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQTTRVALEDNQLSVSADDKYSSGYSSKNKLKNETIARESNASSTLGIHTSVTQAVALDPQPRPVSNSLGGTLMGVIRGSGRGVVKSDAYLGPAAVAPSMSGSLANVDAQTISPPFRTDVSALSSHTPSVASISGRRRFSEMPHSASTYKEQSQTTYRDRAAERRSLYGSSSSVGNDMSDLEIGGSNREFTSRKGDPMPFPPGVGGGRVVGDVNLDTFEVITADKAIDENNVGNRMLRNMGWQEGLEVELDIVIWFFRSISSIFKFPIYCASNLILDLENIFPNLKLKGDPMHETLINWGLRRINVYGLTLASVEGVSWRLRSNLTMRQGSHSVFDITKPIGETVRVQRFGLGKDGSGMVEPVQAQAMENRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREM 1263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1584 1263 Gene3D - 302 461 IPR012677 -
Lal15g1584 1263 MobiDBLite consensus disorder prediction 760 781 - -
Lal15g1584 1263 CDD RRM1_RRM2_RBM5_like 533 613 - -
Lal15g1584 1263 SMART rrm1_1 379 454 IPR000504 GO:0003723
Lal15g1584 1263 SMART rrm1_1 536 611 IPR000504 GO:0003723
Lal15g1584 1263 MobiDBLite consensus disorder prediction 991 1054 - -
Lal15g1584 1263 ProSitePatterns Zinc finger RanBP2-type signature. 484 503 IPR001876 -
Lal15g1584 1263 Coils Coil 257 277 - -
Lal15g1584 1263 SMART zf_4 482 506 IPR001876 -
Lal15g1584 1263 CDD RRM1_RRM2_RBM5_like 376 456 - -
Lal15g1584 1263 MobiDBLite consensus disorder prediction 688 707 - -
Lal15g1584 1263 MobiDBLite consensus disorder prediction 198 286 - -
Lal15g1584 1263 MobiDBLite consensus disorder prediction 140 188 - -
Lal15g1584 1263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 535 615 IPR000504 GO:0003723
Lal15g1584 1263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 380 440 IPR000504 GO:0003723
Lal15g1584 1263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 537 603 IPR000504 GO:0003723
Lal15g1584 1263 CDD OCRE_SUA_like 705 757 IPR035623 -
Lal15g1584 1263 Gene3D - 515 631 IPR012677 -
Lal15g1584 1263 SUPERFAMILY RNA-binding domain, RBD 374 468 IPR035979 GO:0003676
Lal15g1584 1263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 378 458 IPR000504 GO:0003723
Lal15g1584 1263 SUPERFAMILY Ran binding protein zinc finger-like 475 510 IPR036443 -
Lal15g1584 1263 Pfam OCRE domain 708 756 IPR041591 -
Lal15g1584 1263 MobiDBLite consensus disorder prediction 132 356 - -
Lal15g1584 1263 MobiDBLite consensus disorder prediction 309 356 - -
Lal15g1584 1263 ProSiteProfiles Zinc finger RanBP2 type profile. 480 509 IPR001876 -
Lal15g1584 1263 PANTHER RNA-BINDING PROTEIN 282 1263 - -
Lal15g1584 1263 PANTHER RNA-BINDING PROTEIN 98 273 - -
Lal15g1584 1263 Gene3D - 476 510 - -
Lal15g1584 1263 MobiDBLite consensus disorder prediction 1021 1035 - -
Lal15g1584 1263 PANTHER FI21118P1 98 273 - -
Lal15g1584 1263 PANTHER FI21118P1 282 1263 - -
Lal15g1584 1263 SUPERFAMILY RNA-binding domain, RBD 533 618 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1584 Lal-Chr15 17744349 17752335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1584 377 599 Eukaryotic Initiation Factors Gene Family AT2G36660 25.600 5.56e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1584 K13094 - gmx:100787998 1470.29