Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1559 ATGGATTCTAGTGCAAATGAGCGTGTCACGGTTCGAGAGTTCTGTGCAAATGGAAGCTCTATGGCAACAACAGAAGTTGAGGCCAAGCTTGATGAAGGGAACATTCAAGAAGCAGAATCGGCATTGCGAGAAGGGTTGTCACTCAATTATGAGGAAGCAAGAGCTCTTCTCGGAAAGTTAGAGTATCAGAGAGGTAATGTTGAAGGTGCACTCCGTGTCTTCGATGGGATTGATCTGCAAGCAGCTATACAGCGACTGCAGCCTTCCCTTTCTGAAAAGTCACCGGTCAAGAAAGGTTCCACTCGCACTGATTCACCTTCATCGGTCTCTCAACATGCTGCTAGTTTGGTACTTGAAGCCATCTACTTAAAATCCAAATCTCTACAAAAAATGGGAAAATTTACTGAAGCTGCTAATGAATGCAAGCGTGTTCTTGACGCTGTTGAGAAAATATTTTATCAGGGTATACCTGATATTCAAGTGGACAATAAATTGCAAGAGATAGTAAGCCATGCTGTAGAGCTCCTTCCGGAGCTTTGGAAATATGCTGGTTGTTACAATGAGGCAATGTCTGCTTATAGGCATGCACTTCTTAGTCAGTGGAACCTTGATAATGATTACTCTTCCAGAATACAGAAGGCCTTTGCTGTGTTTTTGCTGTACAGTGGGGTGGAGGCAAGTCCACCTAGTTTAGCAGTTCAGGTTGAGGGATCTTATGTACCTAAAAATAATTTGGAAGAAGCGATCCTGCTTCTAATGATTCTTTTACAGAAGTTTAGCGTTGGTAAGATAAAATGGGATCCTTCAATTATGGAACACCTGACATTTGCTCTTTCAGAATGTGGCCAAACTTCTATTTTAGCAAAGCAACTCGAGGAGTTGCTTCCTGGTGTATATCATCGTATTGACCGTTGGAATTCTTTAGCTTTATGTCATAGTGGAGCTGGACTAAACATGAGTGCTTTGAATCTGCTTAGGAAGTCTTTGCACAAACACGAACGACCGAATGACCTTATATCATTGTTATTGGCTGCCAGGATTTGCAGTGAGGATCCTCATCTTGCTGCTGAGGGGGCAGGCTATGCACAGAGGGCAATTAACGATTCTCATGGCCTACATGAGCATTTAAAAGGTGTGTCTCTTCGGACGTTGGGACTTTGCCTGGGAAAGCAAGCTATGGTTGCTTCCTCTGACTTTGAGAGGTCTCATCTTCAGTCCAAAGCTCTGCAATCATTGGACGAGGCAGCTAGAATGGAGCAAAACAACTCCGATCTAATTTTTGAGTTGGCTGTTCAATACGCAAAGCACCGAAATTTGTCCGCTGCTTTACGCTATGCCAAACAGTTTTTTGACAAAACTGGTGGCTCTGTATTGAAAGGTTGGAGATTGCTTGCTCTAGTTTTGTCTGCACAAAAAAGATATTCAGAGGCTGAAGTGGTGACCGATGCTGCTTTAGATGAGACTGCAAAATGGGAACAGGGGCCACTGCTCAGGCTGAAAGCGAAGCTGAAGATTTCCCAATCACGACCCATGGATGCTATCGAAACTTATCGTCACCTTCTTGCATTGGTTCAAGCCCAGAGAAAATCCTTTGGGCATCTCAGAATTAGTTCACAGATTGAGAATGATAAAGTAAATGAATTTGATGTTTGGCATGATCTGGCAAATTTATATGCAAGCCTTTCTCACTGGAAGGATGCTGAAATCTGTTTGCAAAAGGCTAGGGAGTTGAAGGAGTACTCGGCAGCTGTAATACACACAGAAGGCAAGAACAGAACCATTATGCTCTTCCTATGGACTAAGTTGAGATTTTTAGTTTCTCAGGAACTAAAATTGGGAGGCTCGACAAATTTGGAGAGGACTATTATCATTCAACTTCCCCGTTACCCAGAAGTTCTGGTTACACCAGTGATGGCCATAGGCCTAAGGCTGAATCCGTGCATTAGAATTCTGTTTGACGGTCGTGGACAAAATCAAGAAGCTCTTGCTGCCACTACCAATGCTGTCCTACTAGAATCTAATTATGTTCCAAGCAAGATTTCAATGGGTGCTTTGATGCTTAAAATGGGTTCAAAAGCTTTGCCTGCTGCTAGAAGCTTAGTTTCTGATGCACTTAGACTAGAACCGACTAACCGCATGGCTTGGTATTACTTGGGATTAATTCACAAGCACGATGGCCGAATAGGTGACGCTGCAGATTGCTTCCAAGCCGCTTCCATGCTTGAAGAATCAGATCCCATCGAAAACTTCAGCAATATACTTTGA 2265 0.4322 MDSSANERVTVREFCANGSSMATTEVEAKLDEGNIQEAESALREGLSLNYEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPSLSEKSPVKKGSTRTDSPSSVSQHAASLVLEAIYLKSKSLQKMGKFTEAANECKRVLDAVEKIFYQGIPDIQVDNKLQEIVSHAVELLPELWKYAGCYNEAMSAYRHALLSQWNLDNDYSSRIQKAFAVFLLYSGVEASPPSLAVQVEGSYVPKNNLEEAILLLMILLQKFSVGKIKWDPSIMEHLTFALSECGQTSILAKQLEELLPGVYHRIDRWNSLALCHSGAGLNMSALNLLRKSLHKHERPNDLISLLLAARICSEDPHLAAEGAGYAQRAINDSHGLHEHLKGVSLRTLGLCLGKQAMVASSDFERSHLQSKALQSLDEAARMEQNNSDLIFELAVQYAKHRNLSAALRYAKQFFDKTGGSVLKGWRLLALVLSAQKRYSEAEVVTDAALDETAKWEQGPLLRLKAKLKISQSRPMDAIETYRHLLALVQAQRKSFGHLRISSQIENDKVNEFDVWHDLANLYASLSHWKDAEICLQKARELKEYSAAVIHTEGKNRTIMLFLWTKLRFLVSQELKLGGSTNLERTIIIQLPRYPEVLVTPVMAIGLRLNPCIRILFDGRGQNQEALAATTNAVLLESNYVPSKISMGALMLKMGSKALPAARSLVSDALRLEPTNRMAWYYLGLIHKHDGRIGDAADCFQAASMLEESDPIENFSNIL 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1559 754 Gene3D Tetratricopeptide repeat domain 649 752 IPR011990 GO:0005515
Lal15g1559 754 SMART tpr_5 458 491 IPR019734 GO:0005515
Lal15g1559 754 SMART tpr_5 118 151 IPR019734 GO:0005515
Lal15g1559 754 SMART tpr_5 302 335 IPR019734 GO:0005515
Lal15g1559 754 SMART tpr_5 712 745 IPR019734 GO:0005515
Lal15g1559 754 SMART tpr_5 548 581 IPR019734 GO:0005515
Lal15g1559 754 Gene3D Tetratricopeptide repeat domain 395 594 IPR011990 GO:0005515
Lal15g1559 754 SUPERFAMILY TPR-like 545 739 IPR011990 GO:0005515
Lal15g1559 754 Pfam Tetratricopeptide repeat 28 75 - -
Lal15g1559 754 Pfam Tetratricopeptide repeat 695 738 - -
Lal15g1559 754 MobiDBLite consensus disorder prediction 90 109 - -
Lal15g1559 754 PANTHER CALMODULIN-BINDING PROTEIN 650 753 - -
Lal15g1559 754 PANTHER CALMODULIN-BINDING PROTEIN 1 589 - -
Lal15g1559 754 PANTHER PROTEIN NPG1 650 753 IPR043376 -
Lal15g1559 754 PANTHER PROTEIN NPG1 1 589 IPR043376 -
Lal15g1559 754 SUPERFAMILY TPR-like 406 578 IPR011990 GO:0005515
Lal15g1559 754 Gene3D Tetratricopeptide repeat domain 22 206 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1559 Lal-Chr15 17583554 17588671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1559 3 754 Calmodulin-binding Proteins AT2G43040 66.093 0.0 965