Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1552 ATGACTCGCATGCTTAGAATTCTCCATTCAATTAACAACACCACGGCGTCGCCGCCGCCGGAGGCAGTATTGGTGGAGTCAGATTATGTAGTAATCCTAGCCGCCTTGCTTTGTGCCCTCATCTGCGTAGTGGGCCTAATCGCCGTCGCTCGCTTCGCCTGGCTCCGACGTGGTTCAGTTTCCGGCGTCTCAGCAAACTCTCCGGCACAAGCAATCGCAAACAAAGGCCTGAAGAAGAAGGTGCTGAATTCACTTCCCAAGTTCACCTATCACGACAGCGACGCCGGCGGCGACAAAAGGAACAAGTGGGTAGCAATATCGGAGTGCGCGATTTGCTTATCGGAGTTCTCCGCCGGCGACGAGGTACGGGTACTTCCGCACTGCGGCCACGGGTTCCACGTGGCGTGCATCGACCCTTGGTTGGGGTCCCACTCTTCTTGCCCCTCATGTCGCGATCTCCTTGCTCCGGCGAGGTGCCAGAAATGCGGTAATTTTCCGGCAGTTTCTGTCGGAACGGTGGCTATTGATGTTAGTCACGAAACAGAGTCGAAATCCGTAGGTAACAGTTCCGCTGCTAATGCTAACTGTGATATTGTTGGTAATAAGGTGCTGAGTCATCATCATAGTCCTAGTGTTAGTTAA 642 0.5358 MTRMLRILHSINNTTASPPPEAVLVESDYVVILAALLCALICVVGLIAVARFAWLRRGSVSGVSANSPAQAIANKGLKKKVLNSLPKFTYHDSDAGGDKRNKWVAISECAICLSEFSAGDEVRVLPHCGHGFHVACIDPWLGSHSSCPSCRDLLAPARCQKCGNFPAVSVGTVAIDVSHETESKSVGNSSAANANCDIVGNKVLSHHHSPSVS 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1552 213 SUPERFAMILY RING/U-box 81 156 - -
Lal15g1552 213 SMART ring_2 109 150 IPR001841 -
Lal15g1552 213 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 199 - -
Lal15g1552 213 Pfam Ring finger domain 108 151 IPR001841 -
Lal15g1552 213 CDD RING-H2_PA-TM-RING 108 151 - -
Lal15g1552 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 156 IPR013083 -
Lal15g1552 213 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Lal15g1552 213 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1552 Lal-Chr15 17531089 17531730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1552 1 162 C3H Transcription Factor Family AT1G20823 58.824 1.50e-58 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1552 - - gmx:100787383 250.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g1552 15 17531089 17531730 Lal16g1804 16 17148228 17148821 LSH
Lal16g0367 16 2211371 2212024 Lal15g1552 15 17531089 17531730 PCT
Lal15g0305 15 2039303 2039950 Lal15g1552 15 17531089 17531730 PCT
Lal23g1188 23 13239991 13240638 Lal15g1552 15 17531089 17531730 PCT
Lal15g1552 15 17531089 17531730 Lal16g0367 16 2211371 2212024 PCT
Lal15g1552 15 17531089 17531730 Lal15g0305 15 2039303 2039950 PCT
Lal15g1552 15 17531089 17531730 Lal23g1188 23 13239991 13240638 PCT