Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1546 ATGGATTCTACACATACTACTTTTCTCACCACTCTTTTAGTCTTCAAGAACACCATTAGAGAAGAGTTGATTAGGAGTGTGCATGTGTACAAAGTAAGGGGTGGAAAGGAAAGAGAAGTTGAAAGAGAGTTTGTGTTTTCAGAGAGTGGCTCCTATGGTGAAATGCAAGCTAGTCCAATTCTCAGGTTACAGAAAATTTGTGTTTCACAAGTTTCTGAAGGGTACCAGAATGGAGTATGGCTTTGTATATTTGCTTTTCACACAGATCAAAGGCCTCAACTTCCCAGCATTCCATTCCTGTTGTTGGTCTCCAGAAATCCAAAGCTTAAGATGATTCCGACCTTGCTTAATGATCTCCGTGTGATATACGAGTTGGCATGTAAATCAGAAGACAGAGGTATTCCATCAGACTCTCCAGGAGAATGCCAAGAAAAGAGAAATGATTGCCAACCAACAAAAAAAACCATGCCTATGCTTCGTCAGGATCTAAATTGTCTTCCTAGTGATGATGGCATGTCCGGGACATTGGACAATAAGCTAGATGTTGAAACCTTACCAGGTATTATAGAGAAGAAAAGAAGGGCACCTAGTGACCACATAGCAAAAATTGCCTTACCAGATTTGGTCAAGTACTTTGATGTGCCAATAGTAGAAGCTTCAAGAAATCTAAATGTTGGACTAACTGTCCTCAAGAGAAAATGCCGAGAATTTGGTATTCCTCGCTGGCCTCATAGGAAGATCAAATCACTTGACAGTCTCATTCATGATCTGCAGGAAGAGGCAAAACAACATGAACCGGAGTGTGAGGTTGCAGCCTCGGCAGTGGCAGAGAGGAAAAGGATGTTGGAGAGTGAAAAAGAAAATATAGAGAGGAAACCATCAATGGACATAAAAAGTGAGACAAAGAGATTCAGGCAAGAAATCTTCAAGAGAAAGCATAGAGCTAAAGTTCTTGAAAAACAGACTTCTACACTCTCCAACACTTAG 987 0.4073 MDSTHTTFLTTLLVFKNTIREELIRSVHVYKVRGGKEREVEREFVFSESGSYGEMQASPILRLQKICVSQVSEGYQNGVWLCIFAFHTDQRPQLPSIPFLLLVSRNPKLKMIPTLLNDLRVIYELACKSEDRGIPSDSPGECQEKRNDCQPTKKTMPMLRQDLNCLPSDDGMSGTLDNKLDVETLPGIIEKKRRAPSDHIAKIALPDLVKYFDVPIVEASRNLNVGLTVLKRKCREFGIPRWPHRKIKSLDSLIHDLQEEAKQHEPECEVAASAVAERKRMLESEKENIERKPSMDIKSETKRFRQEIFKRKHRAKVLEKQTSTLSNT 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1546 328 PANTHER PROTEIN RKD5 13 321 - -
Lal15g1546 328 Coils Coil 272 292 - -
Lal15g1546 328 Pfam RWP-RK domain 203 250 IPR003035 -
Lal15g1546 328 ProSiteProfiles RWP-RK domain profile. 185 270 IPR003035 -
Lal15g1546 328 PANTHER PROTEIN RKD4 13 321 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1546 Lal-Chr15 17497747 17505872 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1546 19 325 AtRKD Transcription Factor Family AT4G35590 45.231 1.51e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lal15g1546 RWP-RK 3.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1546 - - gmx:113001653 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g1546 15 17497747 17505872 Lal15g1546 15 17497747 17505872 ECH