Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1517 ATGAGGAAATCAATTATGTCTTGGTTCTCATATCACAAACATTCTTCTAAACCACTCCTTTTCCTAATTGTTCTCTCTTTTCTAGAGGTTTCAGTATCTGCTACAACATTCACATTCATGAACAAGTGTGACCACACAGTATGGCCAGGAATTCTTGGAAAACCAGACGTAGGAACCACCGGCTTCGAACTCAAAAGAGGAACCACTAACTCATTCAATGCACCAATGGGTTGGTCAGGGCGGTTCTGGGCCAGAACCGGTTGCAATTTCGATGATTCCGGCCACGGAACATGCAAAACCGGCGACTGTGGCTCCGGCGAGGTAAACTGTAACGGCAACGGTGCAGCACCACCGGCGACCCTCGCCGAGTTCACACTTGGTTCTGGATCCCTACAAGATTACTATGATGTGAGCCTCGTTGATGGGTACAACATTCCTATGTTGGTGGAAGCGAGTGGCGGTTCCGGTTCATGTGCCACCACAGGTTGTGGTGCTGATATGAACCGGCGGTGTCCGTCAGTATTGAGGGTGGAAGGCGGTGACGCGTGTCAGAGTGCTTGTGGTGCGTTTGGGAAAGATGAGTTTTGCTGCGGCGGCGCGTTTAATTCACCTTCTGTTTGTAAGCCTTCGGTTTATTCAGAGATTTTTAAGTCGGCGTGTCCAAAATCTTATAGCTATGCATATGATGATGCTTCAAGTACTTTTACTTGTGCTGGAGCTGATTATACAATTACATTTTGCCCTTCTTCTTTTCCTAGTTTGAAGTCATTGATAAATTCAGGTCCAGGATCATCAATGGAAGAAGCTGCAGTAAGTACTAGTTCATGGATAACTAATTTGGCTACAGGAGATTCCATCACCATAACTCAACCCTTTTCACTTTCTATCTTTGCATTTTTTGTGTCTCTCACTTTCATATTCTTTCCTATTTAG 933 0.4523 MRKSIMSWFSYHKHSSKPLLFLIVLSFLEVSVSATTFTFMNKCDHTVWPGILGKPDVGTTGFELKRGTTNSFNAPMGWSGRFWARTGCNFDDSGHGTCKTGDCGSGEVNCNGNGAAPPATLAEFTLGSGSLQDYYDVSLVDGYNIPMLVEASGGSGSCATTGCGADMNRRCPSVLRVEGGDACQSACGAFGKDEFCCGGAFNSPSVCKPSVYSEIFKSACPKSYSYAYDDASSTFTCAGADYTITFCPSSFPSLKSLINSGPGSSMEEAAVSTSSWITNLATGDSITITQPFSLSIFAFFVSLTFIFFPI 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1517 310 Pfam Thaumatin family 41 248 IPR001938 -
Lal15g1517 310 PRINTS Pathogenesis-related protein signature 36 48 IPR001938 -
Lal15g1517 310 PRINTS Pathogenesis-related protein signature 60 69 IPR001938 -
Lal15g1517 310 PRINTS Pathogenesis-related protein signature 81 92 IPR001938 -
Lal15g1517 310 PRINTS Pathogenesis-related protein signature 133 149 IPR001938 -
Lal15g1517 310 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Lal15g1517 310 SUPERFAMILY Osmotin, thaumatin-like protein 35 249 IPR037176 -
Lal15g1517 310 Gene3D Thaumatin 35 248 IPR037176 -
Lal15g1517 310 ProSitePatterns Thaumatin family signature. 94 110 IPR017949 -
Lal15g1517 310 CDD TLP-PA 36 247 - -
Lal15g1517 310 ProSiteProfiles Thaumatin family profile. 34 248 IPR001938 -
Lal15g1517 310 SMART tha2 37 248 IPR001938 -
Lal15g1517 310 PANTHER PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN 14 271 - -
Lal15g1517 310 PANTHER OS03G0233200 PROTEIN 14 271 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1517 Lal-Chr15 17306836 17309531 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1517 19 289 Receptor kinase-like Gene Family AT5G38280 42.756 1.01e-73 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1517 - - gmx:100808342 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g1517 15 17306836 17309531 Lal15g1517 15 17306836 17309531 ECH
Lal1g0147 1 956211 959554 Lal15g1517 15 17306836 17309531 ECH
Lal15g1517 15 17306836 17309531 Lal23g1472 23 15065409 15067143 LSH
Lal15g1517 15 17306836 17309531 Lal15g1517 15 17306836 17309531 PCT
Lal23g1472 23 15065409 15067143 Lal15g1517 15 17306836 17309531 PCT
Lal15g1517 15 17306836 17309531 Lal23g1472 23 15065409 15067143 PCT