Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1516 ATGGCTGAAATAGTGAAACAACTCTTAGCAAAACCAATTCAATTATCAGATCAAGTAACAAAAGCTGCAGAAGAATCAAGTTCATCATTCAAACAAGAATGCTTAGAACTAAAACACAAAATTGAGAAACTTTCAACCCTTCTTAGACAAGCTGCAAGAGCTAGTTCTGATCTTTATGAACGACCAACTAGGCGAATTATATATGATACTGAACAAGTCCTTCATAAGGCCTTATCATTAGTATTAAAATGTCGAGCCAATGGTCTAATGAAACGTGTTTTTTCGATAATTCCGGCTGCGGCTTTTCGCAAAATGTCGTCGCAGCTTGAGAATTGTATTGGTGATGTGTCATGGCTTTTAAGAGTTTCAGCTCCTGCTGAGGAACGTGGTGATGAGTATTTAGGCCTTCCACCGATTGCCGCGAATGAGCCGATATTAGGACTTATATGGGAACAGATTGCAATTCTTCATACTGGTTCTGTAGATGATAGATCTGATGCTGCAGCCTCACTTGTTTCGCTCGCATTGGATAATCATCGATATGGAAAGTCTATCATCGAGGAAGGCGGGGTTGGACCTTTGTTGAAGTTGATAAAAGAAGGTAAGAAGGAAGGTCAAGACAGTGCTGCAAGAGCGATTGGACTACTTGGGCGTGATGCTGAAAGCGTTGAGCAAATGATACAAGCCGGTGTGATTTCGGCTTTTGCGAAAATACTGAAAGAAGGTCCAATGAAAGTGCAAGGTGTAGTGGCTTGGGCTGTATCCAACCTTGCGGGGAATTACCCGAAATGCCAAGATCTGTTTGCTCAACATAATATAATTCGATTGCTCGTTAGCCATCTTGCTTTTGAGACAGTTCAAGAGCATAGTAAGTATGCTATTGTTAGCAACAAACCTATATCAATCCATGCTGTTTTGATGGCGAGTAATAATAATTCTAGTTCGAATGCCAATAGTGCGAAAAAGGAGAATGAGGATGAGGAAATAAAGAATCGAATTCAGCATCCGTTGGGGAATAGGTCCTCGAATCAGATGCACAAAGTGGTCACAAGTACAATGGCAATGCATATTGCAGCAAAGCAACAACCCAATCAAGGAAATGAAGCAAATCCAGACACTCAGGAAAGTAATCCTAATCCTAAGAGCAATGGAGTTAGTAGCCATCAAATAAACCAGCAAAGTTATTCGTATTCGGGGATTAACATGAAGGGAAGGGAACTCGAAGACCCTGAGAATAAGGCATACATGAAAGCAATGGCAGCAAGGGCACTCTGGCATTTAGCGAAAGGAAACTCGGAAATTTGTCGGAGCATAACAGAATCAAGAGCTTTGCTATGCTTTGCTGTTCTTCTTGAAAGAGGAGCTAAAGAAGTCCAATACAATTCAGCAATGGCAGTGATGCAGATCACAGCAATGGCTGAGAAAGATGCAGAATTGAGAAGATCTGCATTCAAGCCTAACTCTCCTGCTTGCAAAGCAGTTGTTGATCAAATGCTTAAGATCATAGAAAAAGCAGATACAGATCTCTTAGTTCCTTGTGTCAAGGCAATTGGAAATTTGGCAAAAACATTCCGAGCCACCGAGACAAGGATAGTCGGTCCCTTAGTGAGGCTTCTCGACGAAAGAGAGGCAGAAGTGACTAGGGAGGCACTGATCTCCCTCACAAAATTTGCCTGCACAGAAAACTACCTCCACCTTGATCATTGTAAGGCAATTATAAGCGCGGGTGGTGCGAAACACTTGGTTCAGCTTGGATATTTTGGAGAACACATTGTTCAGAAACCTGCATTAGTTCTGCTCTCCTATATTGCATTGTATGTGCCTGAAAGTGAAGAACTTGCTAAGGACAATGTGCTCGGATTGCTTGAATGGGCATCCAAGCAATCCTTCGTGACGCAATTCGAATCCTTGGAGGCATTGTTGCAAGAATCCAAGGGTAGGCTGGAGCTTTATCAGTCTAGAGGTTCAAGAGGATAA 1977 0.4213 MAEIVKQLLAKPIQLSDQVTKAAEESSSSFKQECLELKHKIEKLSTLLRQAARASSDLYERPTRRIIYDTEQVLHKALSLVLKCRANGLMKRVFSIIPAAAFRKMSSQLENCIGDVSWLLRVSAPAEERGDEYLGLPPIAANEPILGLIWEQIAILHTGSVDDRSDAAASLVSLALDNHRYGKSIIEEGGVGPLLKLIKEGKKEGQDSAARAIGLLGRDAESVEQMIQAGVISAFAKILKEGPMKVQGVVAWAVSNLAGNYPKCQDLFAQHNIIRLLVSHLAFETVQEHSKYAIVSNKPISIHAVLMASNNNSSSNANSAKKENEDEEIKNRIQHPLGNRSSNQMHKVVTSTMAMHIAAKQQPNQGNEANPDTQESNPNPKSNGVSSHQINQQSYSYSGINMKGRELEDPENKAYMKAMAARALWHLAKGNSEICRSITESRALLCFAVLLERGAKEVQYNSAMAVMQITAMAEKDAELRRSAFKPNSPACKAVVDQMLKIIEKADTDLLVPCVKAIGNLAKTFRATETRIVGPLVRLLDEREAEVTREALISLTKFACTENYLHLDHCKAIISAGGAKHLVQLGYFGEHIVQKPALVLLSYIALYVPESEELAKDNVLGLLEWASKQSFVTQFESLEALLQESKGRLELYQSRGSRG 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1516 658 Gene3D - 150 339 IPR011989 -
Lal15g1516 658 Gene3D - 402 647 IPR011989 -
Lal15g1516 658 Coils Coil 310 330 - -
Lal15g1516 658 Coils Coil 634 654 - -
Lal15g1516 658 SUPERFAMILY ARM repeat 153 625 IPR016024 -
Lal15g1516 658 MobiDBLite consensus disorder prediction 320 334 - -
Lal15g1516 658 PANTHER ARMADILLO REPEAT ONLY 4 1 658 - -
Lal15g1516 658 Pfam Armadillo/beta-catenin-like repeat 221 258 IPR000225 GO:0005515
Lal15g1516 658 SMART arm_5 219 259 IPR000225 GO:0005515
Lal15g1516 658 SMART arm_5 487 522 IPR000225 GO:0005515
Lal15g1516 658 SMART arm_5 177 218 IPR000225 GO:0005515
Lal15g1516 658 SMART arm_5 431 471 IPR000225 GO:0005515
Lal15g1516 658 SMART arm_5 565 605 IPR000225 GO:0005515
Lal15g1516 658 PANTHER - 1 658 - -
Lal15g1516 658 Gene3D - 3 122 IPR036537 GO:0007166
Lal15g1516 658 MobiDBLite consensus disorder prediction 361 390 - -
Lal15g1516 658 MobiDBLite consensus disorder prediction 312 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1516 Lal-Chr15 17296118 17299483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1516 147 278 U-box Gene Family AT2G23140 29.545 5.08e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1516 - - gmx:100794693 1004.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g1516 15 17296118 17299483 Lal15g1516 15 17296118 17299483 ECH
Lal16g0138 16 820357 821611 Lal15g1516 15 17296118 17299483 LSH
Lal15g1516 15 17296118 17299483 Lal23g1471 23 15061708 15063711 LSH
Lal16g0138 16 820357 821611 Lal15g1516 15 17296118 17299483 PCT
Lal15g1516 15 17296118 17299483 Lal15g1516 15 17296118 17299483 PCT
Lal23g1471 23 15061708 15063711 Lal15g1516 15 17296118 17299483 PCT