Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1504 ATGAGAACTCGAAATGCCGATTCTTCCAAATCCACAACCCCTAAAAAGACACCACCGCCCAGAAAATCCGCCACTAAAACCGCCGCTGACTCCTCCTCCGCCAACCGCTCTGCTCCGCCCATAACGAGGCAGATGAAGAAGAAAGACGCATCTCCCTCACCCAACCCTATCTCCGATTCCAATTCGCTTCAATCGCCTGAACAACCGAAATCATCAGGTGATGCTGCAACAACTAAAAAATCTGCAAAGAAGAGGGCACCGGGGAGACCGAGAACTAAACCAGTTGCCACTCCAAACCTGGAAGAAAAATTGGAGGCAGCAGTTGATGAAACTCCAATTGAGGATAATTTTGCGGCAGATGAGCAAGTGGAAGAGCCTCAAGATGTTGAACTAGTTGATGCACATACTGTTACAAGTCAGGAGCTGGGTGAACAAGGCATTTGGTCTGTTGGACAATCTGAAGAGAAGGAACAAAAGGCCATGGAAGTGGATGGAACTGATCTCGGAAATGTTTGCGAATCGAAAGACAAGGGAGAGAACATTGTGAGAACTGAAGTAACTGCTTCTCAGGATGCTTCCATTTCTTTCAAACAACCAGAGCGCAACATAGTTGACCTCAATATATCTGCAGATGGTGAAGATTCTAATGGTGCAAAGGAGGGAGAGAAAGGAATGGAAGAGTTTAACGAACAGGAGGGAGAGAAAGGAATGGAAGAGTCTAACGAACAAAAGGGAGAGAAGGGGATGGAAGAGTTTAACAAACAGGAGGGAGAGAAAGGGATGGAAGAGTTTAAAGAACAGGAGGGAGAGAAAGGAGAGGAAGAGATTAAAGATCAGGAGGGAGAGAAAGGAGTGGAAGAGTTTAAAGAAGAGGAGGGAGAGAAAGGAGAGGAGGAGTTTAAAGAACAGGGGGGAGAAAAAGGAAAGGAAGAGTTGAAAGAACTGGATGTGGGGAAAGGAAAGGAAGGGCTGAAAGATGAACAGGAGGGGGAGAAAGAAAAGGAAGAGGTGAAAGAACAGGAGGGAGAGAAAGGAAAGGAAGAATTGAAAGAAAAGGAAGAGGTGAAAGAACAGGAGGGAGAGAAAGGAAAGGAAGAATTGAAAGAAAAGGAAGAACTGAAGGAAGAGGAAACTAACATTATTGCACACAAAGAGCAATCTAGTACTGTGTCTTTTAGTTTAGTAGTGAAAGATCAATTGCAAAAAGACGTTAATCCTGAAAAGGATGTTGATGAGGGAATGAAGAGTAGTGAAAGGTTAGATCTTGGAGAACAAGATGGAGAGGACTTTATTGAGGAAGATCCTGAGGAACCCCCCGAAGAACCTGATGCATTTGAAGAGCAGCATATAGAATATGACGCCATTGCAAAACAGCGAAAAATTAACAAAGAACATGAGATATTTGTGGGAGGGCTGGATCGTGATGCTACAGAGGAAGATCTGAGAAAGGTTTTTGAGAGGATTGGGGAGGTAGTTGAAGTCAGGTTGAACAAAAATTCTTCAACAAATAAAAATAAGGGCTATGCATTTGTGAAGTTTGCTAATAAGGAACATGCAAAAAAGGCTTTGTCAGAAATGAAGAACCCTGTTATACATGGTAAACGATGTGGCACTGCACCTTGTGAGGATAATGACACATTATTCTTGGGAAATATTTGCAATACATGGACTAAAGAAGCTATTAAACAGAAGTTGATGGATTATGGTATTGAAGGGGTTGAAAACATTACGCTGGTCCCAGATGTTCAACATGAAGGGTTGAGCCGAGGTTTTGCATTCATTGAGTTTTCTTGTCATGGTGAGGCCATGCTTGCATACAAGAGGCTTCAAAAGCCTGATGCCATCTTTGGCCATGCTGAGCGAACTGCCAAGGTAGCCTTTGCTGAACCCATACATGATCCAGACCCGGAGACAATGGCACAGGTGAAATCTGTGTTTATTAATGGTCTACCTCCACACTGGGATGAAAATCGTGTTAGGGAACTGTTAAAATCTTATGGTGAAATTGTTAGAGTAGTACTAGCACGGAATATGTCTACAGCTAAGAGGAAGGATTATGGATTTGTTGATTTCTCTACACATGAAGCTGCTGTAGCTTGTGTTGATGGTGTAAATAAATCAGAATTGGGTAACGGGGCATCAAAGGTAGAAAATTGGGGTAGCTTCTATTGTAGGAAATATGATAAAATTGTGCCTTTGTTGCTTGAGCATGTGTGGAGGAGATCATTAGAAGCCCTGATAAAAGTGAGAGCCAGGCTTTCAAATCCTTTGCCTAAAACACAGGCTGTAAAAGGTGGCATGTGCGGTGGGTTCAGAATTGGTCATGCTAGGACTGGAGCTTTTCCAAGACCTGGAAGGGGTTTTGGGCGTGGAAGACAGCCTTTCAACAACTGGGGAAATTTCAACAGGGATAGGAATTTCTATCGTGGTCGTGGTGGATACAGTCAATTTGGAAGAATGGGTTCTCGAGATGACCATGATTTTAATATGCATCCAGATTTCCATCATAGGCAATTTGGAGCTGTGAGGGGTGGGCATTATCCAGGTAGCCAAGGTGCTGCATTTGTTGGTCCATCTAGACATCATGATAGACCCTGGTATGGCATCCCTGATGGAGGTCCTAGGGAACCAATTCCTATGAGAAGGCCCTACTCCCCAGGTGGACAGTTTGACAGGCCTTTTATGGGACAGCATTTTGATGATCCATATCTCCATGATGACAATTTGCATGGTGGGGTGAAACGTCCATTTTATATGACTGAGCCTGAACCTGATTACATGGGACCTAGTAGACTTCGACCTCGACTGGACTATGCAGATCCAGCTTTGTTTCGTGGAAATCGTTACCATGGTCTAAATTTCACTTCTTTTTTCCCCTTACTTTTTGAATGGCATGGTTCTATTCTTGATTACTCTTTTTTATATGTAGATCCTTTTGGGGAAGCCAGCACACATATGGTGGAGGTCCATATTCATCTTTTTATGAGGGTGATAGCTCACATGGGCATGGATACTACTATTAGTGTGAAGAACCTTTCTGTGGGATCTGGAACTGTGGAGTGGACTTCTTCAATTATGAGCATGCTGCTTGAGCATAACATTTTGAAGTCGCATGTTGCTTTTGTACACTTGTTTCTTATTATATTCCTTGGGTTCTATTTATATAATCTACTAGACCATATGTGCTATAGACTAAGTGACTTGATGTGTGGGGTAGGCTGTCTCTCAGGTCCTGGAGTAAGGGTCAAATTTATTGATTTGATTCCTTATGATACTAAGTCATTGGTACAGAGGCAGCTAATGTTTGGTGTCTGGGGGATGAAGCAGCCATCTTCATTGCATTATAACATTGGCCTAGTGTGCTCCTGTGGGCAGCATGCTAAGGCTTTGGTGAGATGCCTTCCTTCGTCAGCCGGGTTTGAGGTTTACCTTAGTCTGTAG 3441 0.433 MRTRNADSSKSTTPKKTPPPRKSATKTAADSSSANRSAPPITRQMKKKDASPSPNPISDSNSLQSPEQPKSSGDAATTKKSAKKRAPGRPRTKPVATPNLEEKLEAAVDETPIEDNFAADEQVEEPQDVELVDAHTVTSQELGEQGIWSVGQSEEKEQKAMEVDGTDLGNVCESKDKGENIVRTEVTASQDASISFKQPERNIVDLNISADGEDSNGAKEGEKGMEEFNEQEGEKGMEESNEQKGEKGMEEFNKQEGEKGMEEFKEQEGEKGEEEIKDQEGEKGVEEFKEEEGEKGEEEFKEQGGEKGKEELKELDVGKGKEGLKDEQEGEKEKEEVKEQEGEKGKEELKEKEEVKEQEGEKGKEELKEKEELKEEETNIIAHKEQSSTVSFSLVVKDQLQKDVNPEKDVDEGMKSSERLDLGEQDGEDFIEEDPEEPPEEPDAFEEQHIEYDAIAKQRKINKEHEIFVGGLDRDATEEDLRKVFERIGEVVEVRLNKNSSTNKNKGYAFVKFANKEHAKKALSEMKNPVIHGKRCGTAPCEDNDTLFLGNICNTWTKEAIKQKLMDYGIEGVENITLVPDVQHEGLSRGFAFIEFSCHGEAMLAYKRLQKPDAIFGHAERTAKVAFAEPIHDPDPETMAQVKSVFINGLPPHWDENRVRELLKSYGEIVRVVLARNMSTAKRKDYGFVDFSTHEAAVACVDGVNKSELGNGASKVENWGSFYCRKYDKIVPLLLEHVWRRSLEALIKVRARLSNPLPKTQAVKGGMCGGFRIGHARTGAFPRPGRGFGRGRQPFNNWGNFNRDRNFYRGRGGYSQFGRMGSRDDHDFNMHPDFHHRQFGAVRGGHYPGSQGAAFVGPSRHHDRPWYGIPDGGPREPIPMRRPYSPGGQFDRPFMGQHFDDPYLHDDNLHGGVKRPFYMTEPEPDYMGPSRLRPRLDYADPALFRGNRYHGLNFTSFFPLLFEWHGSILDYSFLYVDPFGEASTHMVEVHIHLFMRVIAHMGMDTTISVKNLSVGSGTVEWTSSIMSMLLEHNILKSHVAFVHLFLIIFLGFYLYNLLDHMCYRLSDLMCGVGCLSGPGVRVKFIDLIPYDTKSLVQRQLMFGVWGMKQPSSLHYNIGLVCSCGQHAKALVRCLPSSAGFEVYLSL 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1504 1146 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 643 712 IPR000504 GO:0003723
Lal15g1504 1146 SMART rrm1_1 644 717 IPR000504 GO:0003723
Lal15g1504 1146 SMART rrm1_1 546 626 IPR000504 GO:0003723
Lal15g1504 1146 SMART rrm1_1 466 539 IPR000504 GO:0003723
Lal15g1504 1146 MobiDBLite consensus disorder prediction 206 444 - -
Lal15g1504 1146 MobiDBLite consensus disorder prediction 48 76 - -
Lal15g1504 1146 CDD RRM_SF 645 717 - -
Lal15g1504 1146 MobiDBLite consensus disorder prediction 1 176 - -
Lal15g1504 1146 MobiDBLite consensus disorder prediction 383 398 - -
Lal15g1504 1146 MobiDBLite consensus disorder prediction 215 382 - -
Lal15g1504 1146 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 465 535 IPR000504 GO:0003723
Lal15g1504 1146 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 545 630 IPR000504 GO:0003723
Lal15g1504 1146 Coils Coil 321 341 - -
Lal15g1504 1146 SUPERFAMILY RNA-binding domain, RBD 541 611 IPR035979 GO:0003676
Lal15g1504 1146 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 645 711 IPR000504 GO:0003723
Lal15g1504 1146 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 467 535 IPR000504 GO:0003723
Lal15g1504 1146 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 547 611 IPR000504 GO:0003723
Lal15g1504 1146 MobiDBLite consensus disorder prediction 1 40 - -
Lal15g1504 1146 Gene3D - 545 629 IPR012677 -
Lal15g1504 1146 MobiDBLite consensus disorder prediction 401 424 - -
Lal15g1504 1146 CDD RRM_SF 547 610 - -
Lal15g1504 1146 Gene3D - 437 544 IPR012677 -
Lal15g1504 1146 Gene3D - 632 819 IPR012677 -
Lal15g1504 1146 MobiDBLite consensus disorder prediction 155 176 - -
Lal15g1504 1146 PANTHER NUCLEOLIN-LIKE ISOFORM X1 439 715 - -
Lal15g1504 1146 PANTHER NUCLEOLIN-LIKE ISOFORM X1 747 950 - -
Lal15g1504 1146 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 439 715 - -
Lal15g1504 1146 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 747 950 - -
Lal15g1504 1146 MobiDBLite consensus disorder prediction 425 444 - -
Lal15g1504 1146 CDD RRM_SF 467 535 - -
Lal15g1504 1146 SUPERFAMILY RNA-binding domain, RBD 466 714 IPR035979 GO:0003676
Lal15g1504 1146 Coils Coil 346 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1504 Lal-Chr15 17166823 17181559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1504 467 705 Eukaryotic Initiation Factors Gene Family AT2G23350 22.764 1.38e-15 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1504 - - gmx:100819035 864.374