Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1459 ATGAATTATAATTACCAAGGGGCTCTAATGGGTGTTCCACAAACTCCAAATCCATCTCCTTCACATCTATATCCACAAGAAATTCAGATTAAACTTTATCAAGCTTTCATATTCTCAATTCCCATACTCTTCACTATAATTCTAATTCTCTTGTTTTACTTGTTCTATCTCAAGAGAAGGGCTTCTTCTTTCACACACCCTCCACTTCACATAATTACTAGCACTTCCAATCCTCAAACTACATATTCATATCCTTCCTCACCTTATCGTTCAGATCATCTCATGGTACAAGTTTTGGACAAACTTCCAAGAGTTTTATTTGATGAAGATTTGAGAGCAAGGGATTCATTATGTTGTGTTTGTCTAGGAGAATTTGAGCTGAAAGAAGAGGTGTTACAAATTCCTTATTGCAAACATGTGTTTCACATAGAATGCATACATAATTGGCTTCAATCAAACACAACATGTCCACTATGTAGATGTTTTATTATTCCCACCACTACTACTACTAAGTTCCTTACTCCACCACCATCTATTTTATTAGACCCACCACAACAACAAAGTGATGTTGTTTCACATATCATATCATTGCCTCCTCAACTACAAGATGAAGCAAGTGATTCCTCAAATAATAATGCCCATATTTCAAGGGAATGA 657 0.3546 MNYNYQGALMGVPQTPNPSPSHLYPQEIQIKLYQAFIFSIPILFTIILILLFYLFYLKRRASSFTHPPLHIITSTSNPQTTYSYPSSPYRSDHLMVQVLDKLPRVLFDEDLRARDSLCCVCLGEFELKEEVLQIPYCKHVFHIECIHNWLQSNTTCPLCRCFIIPTTTTTKFLTPPPSILLDPPQQQSDVVSHIISLPPQLQDEASDSSNNNAHISRE 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1459 218 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Lal15g1459 218 Pfam Ring finger domain 118 160 IPR001841 -
Lal15g1459 218 SMART ring_2 118 159 IPR001841 -
Lal15g1459 218 SUPERFAMILY RING/U-box 95 168 - -
Lal15g1459 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 164 IPR013083 -
Lal15g1459 218 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 12 175 - -
Lal15g1459 218 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 12 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1459 Lal-Chr15 16810741 16813303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1459 12 194 C3H Transcription Factor Family AT4G10150 37.500 2.57e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1459 K19039 - gmx:100806499 239.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g1459 15 16810741 16813303 Lal15g1459 15 16810741 16813303 ECH
Lal15g1459 15 16810741 16813303 Lal23g0496 23 7681836 7685981 LSH