Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1417 ATGGACGATAACGTTCTCGACGATATTATTCGGAGGCTTGTGGCGGCGAAGAACGGAAGAACGGCGAGGCAGGTTCAGATTACGGAGGCGGAGATTCGACAACTGTGTACTTCGTCTAAGGAGATTTTTCTCAGTCAACCCAATCTTCTTGAGCTTGAAGCTCCTATCAAGATTTGTGGAGATGTCCATGGTCAGTATTCAGATCTTCTAAGGTTGTTTGAGTATGGGGGATACCCACCTGCAGCAAATTATTTATTTCTCGGAGATTATGTTGATCGTGGTAAGCAGAGTATAGAGACAATATGTTTGCTCCTTGCATACAAGATCAAATACAAGGAGAACTTCTTTCTTCTCAGGGGAAATCATGAATGCGCCTCCATCAATCGTATCTATGGTTTCTATGATGAGTGCAAGAGGAGGTTTAATGTTCGCCTCTGGAAGGCATTTACTGATTGCTTTAATTGTCTACCTGTTGCTGCTCTTATAGATGAGAAGATCCTTTGCATGCATGGTGGGCTGTCTCCTGATCTTAAAAACTTGGATCAGATAAGGAATATTGCTCGCCCTATTGATGTACCTGACCAAGGCCTTCTCTGTGACCTGCTATGGGCCGACCCGGATAAAGACCTTGATGGCTGGGGAGAAAATGACCGAGGTGTGTCATTTACATTTGGGGCTGACAAGGTTGCTGAATTTCTTGAACACCTTGATCTCGATCTGGTTTGCAGAGCCCACCAGGTTGTAGAAGATGGATATGAATTTTTTGCCAAGCGTCAGCTTGTGACTATATTCTCTGCACCAAATTATTGTGGGGAGTTTGATAATGCTGGTGCTATGATGAGTGTGGATGAAACCTTGACATGCTCTTTCCAGATACTTAAATCTTCTGATAAGAAAGGGAAAATTGGATTTGGCAACAATACATCTAGACCAGGAACTCCACCCCATAAGGGTGGGAAATCTTAA 966 0.4358 MDDNVLDDIIRRLVAAKNGRTARQVQITEAEIRQLCTSSKEIFLSQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGYPPAANYLFLGDYVDRGKQSIETICLLLAYKIKYKENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKAFTDCFNCLPVAALIDEKILCMHGGLSPDLKNLDQIRNIARPIDVPDQGLLCDLLWADPDKDLDGWGENDRGVSFTFGADKVAEFLEHLDLDLVCRAHQVVEDGYEFFAKRQLVTIFSAPNYCGEFDNAGAMMSVDETLTCSFQILKSSDKKGKIGFGNNTSRPGTPPHKGGKS 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1417 321 SMART pp2a_7 27 297 IPR006186 GO:0016787
Lal15g1417 321 SUPERFAMILY Metallo-dependent phosphatases 23 297 IPR029052 -
Lal15g1417 321 PRINTS Serine/threonine phosphatase family signature 55 82 IPR006186 GO:0016787
Lal15g1417 321 PRINTS Serine/threonine phosphatase family signature 84 111 IPR006186 GO:0016787
Lal15g1417 321 PRINTS Serine/threonine phosphatase family signature 117 141 IPR006186 GO:0016787
Lal15g1417 321 PRINTS Serine/threonine phosphatase family signature 151 177 IPR006186 GO:0016787
Lal15g1417 321 PRINTS Serine/threonine phosphatase family signature 180 207 IPR006186 GO:0016787
Lal15g1417 321 PRINTS Serine/threonine phosphatase family signature 237 257 IPR006186 GO:0016787
Lal15g1417 321 PRINTS Serine/threonine phosphatase family signature 259 275 IPR006186 GO:0016787
Lal15g1417 321 Gene3D - 1 306 IPR029052 -
Lal15g1417 321 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 319 - -
Lal15g1417 321 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP1 ISOZYME 3 1 319 - -
Lal15g1417 321 MobiDBLite consensus disorder prediction 301 321 - -
Lal15g1417 321 ProSitePatterns Serine/threonine specific protein phosphatases signature. 118 123 IPR006186 GO:0016787
Lal15g1417 321 CDD MPP_PP1_PPKL 5 294 - -
Lal15g1417 321 Pfam Calcineurin-like phosphoesterase 55 247 IPR004843 GO:0016787
Lal15g1417 321 Pfam Serine-threonine protein phosphatase N-terminal domain 6 53 IPR031675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1417 Lal-Chr15 16319271 16323740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1417 56 243 Calmodulin-binding Proteins AT5G63870 29.596 2.45e-25 101
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g1417 15 16319271 16323740 Lal15g1417 15 16319271 16323740 ECH
Lal16g1184 16 8135000 8139262 Lal15g1417 15 16319271 16323740 LSH