Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1413 ATGGGTCACCATTCATGCTGTAATCAACAGAAGGTTAAGAGAGGGTTATGGTCCCCTGAGGAAGATGAGAAACTCGTTACATATATTACCATTCATGGCTATGGCTATTGGAGTGAAGTTCCACAAAAAGCTGGGCTTCAAAGATGTGGCAAAAGTTGTCGTTTGAGATGGATTAATTATTTGAGACCTGATATTAGAAGAGGAAGGTTTACACATGAGGAAGAGAAGTTAATTATAAACCTTCATGGTGTTGTAGGCAACAGGTGGGCTCACATTGCAAGCCACTTACCTGGAAGAACGGATAATGAAATAAAGAACTATTGGAATTCTTGGATCAAAAAGAAAATAAGAAAGCCTGGGGTCTCTTCAAATACCAATGTTTCAAAACATGTTGATTATTCACAGTTAGATTTCAATTCCAAACAACTTGATCACTATCCAAATTGCAAGCAAGATAATCTAATAACAAAGCTACCACAAGTTCAAGAAACCTTATTTTCTTCCACATGCCCTCTATTTATGTTTGACACTAGTTCACTAGATCATGGAACAACAACCTTAACAGACAACAATATAAGACCATATCTCTTCCAAGATTCTGTGGGTTTTAACACTGAAACATGGAACTTAAGCCATCATCATCAAGTCCAAGAACCTTTTACTATTGGCTTGTACAACACCAATAATTATCTGCCACCATTGATAGAGAATGTGGAAAACATGGTGGCAATTGAAGTACAATGTTGTAGTATGAATGAACAAGGAGATGTTGCACTAGAATGCATGCAGAGACAAGAGTTGAATGAATGGGTAGAAACTCAACAGCAACAATGTTCTAATTTCCTTTTCTGTTGGGACAATGTTGAAGGACAACTTGGTGGTGAAGAACTTGCACCGAATTCATCAAATATGATAACAAATACACTTCCTTCTTTTCCTTAA 942 0.3694 MGHHSCCNQQKVKRGLWSPEEDEKLVTYITIHGYGYWSEVPQKAGLQRCGKSCRLRWINYLRPDIRRGRFTHEEEKLIINLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPGVSSNTNVSKHVDYSQLDFNSKQLDHYPNCKQDNLITKLPQVQETLFSSTCPLFMFDTSSLDHGTTTLTDNNIRPYLFQDSVGFNTETWNLSHHHQVQEPFTIGLYNTNNYLPPLIENVENMVAIEVQCCSMNEQGDVALECMQRQELNEWVETQQQQCSNFLFCWDNVEGQLGGEELAPNSSNMITNTLPSFP 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1413 313 CDD SANT 69 112 IPR001005 -
Lal15g1413 313 SMART sant 13 63 IPR001005 -
Lal15g1413 313 SMART sant 66 114 IPR001005 -
Lal15g1413 313 Gene3D - 6 66 - -
Lal15g1413 313 CDD SANT 17 61 IPR001005 -
Lal15g1413 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal15g1413 313 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lal15g1413 313 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal15g1413 313 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal15g1413 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal15g1413 313 Gene3D - 68 137 - -
Lal15g1413 313 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal15g1413 313 PANTHER MYB DOMAIN PROTEIN 55 1 313 - -
Lal15g1413 313 PANTHER MYB TRANSCRIPTION FACTOR 1 313 - -
Lal15g1413 313 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1413 Lal-Chr15 16272262 16274995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1413 1 300 MYB Transcription Factor Family AT1G63910 49.304 1.57e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal15g1413 Myb_DNA-binding 3.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1413 K09422 - gmx:100797787 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g1413 15 16272262 16274995 Lal15g1413 15 16272262 16274995 ECH
Lal16g1194 16 8228029 8231010 Lal15g1413 15 16272262 16274995 LSH
Lal15g0064 15 447195 449504 Lal15g1413 15 16272262 16274995 PCT