Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1411 ATGGATTCATCAATAGGAATATGCTATTCAGGTATATCATCAAATAATCAAACTCATCTTGTGAACCAGATCCAAGGATTTGTGTCAGACTCAGACATGTTCAACCTCTCCACAAACATGGATATGATAGGGTTTTCCAAGAATCATATTCATCAACAAAGTTTGTTCAACAAACTTGGTCAACAACAACAACATCAAGGTCCTTCTTTATCTTCAAATACCATGAATGAGTCTTCTTGTAACACTTTCTATCATCATGAGTATAATAATAAACCAGGTTTCACATCAGGGAATATTTCTGAAACAACAAGTAGTGATAATAATCTAATCTTGATGAGTGCTCATGATTCATTACTTGTTGATGATTCTTCTCTAAGGTATGTGTTCCCTTCTGAAGTTAATAACAATAATAACCATACACCAAGTCAAGGTCTTTCACTATCTCTTAGTTCAAACAATATTGGGTTGCAATCTTTTGAGGTGAGAAATAATCAACAACACCAACCTGATTTTGCTTCTTCATCAAGTTCTAGAGATGGGTTCTATGCAAAATCATCTCAACAACAACAACAACAAATGTTGCAGCAAGGTGCAAATAGTTATCAAGGACATTTCTTGCTAAAAAATTCTAAGTTCTTGGTACCTGCACAAGAACTTCTGAACGAGTTTTGTAGTCTAGAAACAAAGGAAAATGATATAGTAAAGCAAAAATCTGATCACAACAACAAACATTCATTGAAAGAGGATAGTGGTAAGAATAATCATTCTCTTACCTCCTTGGAATTCTTGGAACTTCAGAAGAGAAAAACCAAGCTGCTTTCTATGCTGGAAGAGGTTGAGAGAAGATATAGGCACTATCACAATCAAATGAAGGGTGTGGTTTCTTCATTTGAAGCAATGGCTGGTAATGGTGCTGCAATAGTGTACTCAACTTTGGCTTTGAAAGCTATGTCAAGACATTTTAGGTGTTTAAAAGATGGGATTTTGGATCAAATTCAAGAGACAAAGAAAGCAATGGGAGAAAAAGAACAAGCTTCATCACCATGCACAACAAAGGGTGAAACACCAAGGCTTAGAATACTTGACCAAACACTTAGACAACAAAGAACATTTCAACAAATGAACATGATGGAAACTCATCCTTGGAGACCCCAACGTGGTCTTCCTGAAAGATCTGTCTCTTTTCTTCGTGCTTGGCTCTTTGAACATTTTCTTCATCCGTACCCAAGTGACGTTGATAAACATATTTTAGCACGCCAAACTGGTCTCTCAAGAAGCCAGGCAATTTGGTGCACACTTTTTCATATGAAGCAGGTTTCAAATTGGTTTATCAATGCAAGGGTAAGGCTATGGAAGCCAATGGTGGAGGAAATATATTTGGAAGAAGCAAAAGAGCAAGAAAATAATGATGAAGAAGATATTATCCACAAAAATGTTCAAAACCATGAAGATCAAAAACCAACCAAGGCTAGACTCCTAAGAATTGATTCAGAGTGTGTCTCATCCATAATCAACAACCATGATCATCAAAAAAATGACCCAAAGAATTGCATGAATCCTCATGAACAATGTTTTGGTTCCATGGAGCTTGATTTTTCATCTTACACACACAACAACTATGATCACAATGTTAATCAAAGTTTCAACCTTGGCAATGGAAATGGTGTGTCATTGACTCTAGGGTTACAACAACATGGTGGAAGTGGGGTTAGTTTGGCTTTTCCTCAAGCAACACAAAGCTCAATGTTCTACACAAGGGATCAAAATGATGAAGAGTGTCAACCAATTCATTATTCTATTTTAGATGGTGAAACACAAAGTAATATGCCATATAGGAACTTGATAGGAACACATTTGCTTCATGACTTGGCTGGATAG 1878 0.3632 MDSSIGICYSGISSNNQTHLVNQIQGFVSDSDMFNLSTNMDMIGFSKNHIHQQSLFNKLGQQQQHQGPSLSSNTMNESSCNTFYHHEYNNKPGFTSGNISETTSSDNNLILMSAHDSLLVDDSSLRYVFPSEVNNNNNHTPSQGLSLSLSSNNIGLQSFEVRNNQQHQPDFASSSSSRDGFYAKSSQQQQQQMLQQGANSYQGHFLLKNSKFLVPAQELLNEFCSLETKENDIVKQKSDHNNKHSLKEDSGKNNHSLTSLEFLELQKRKTKLLSMLEEVERRYRHYHNQMKGVVSSFEAMAGNGAAIVYSTLALKAMSRHFRCLKDGILDQIQETKKAMGEKEQASSPCTTKGETPRLRILDQTLRQQRTFQQMNMMETHPWRPQRGLPERSVSFLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQAIWCTLFHMKQVSNWFINARVRLWKPMVEEIYLEEAKEQENNDEEDIIHKNVQNHEDQKPTKARLLRIDSECVSSIINNHDHQKNDPKNCMNPHEQCFGSMELDFSSYTHNNYDHNVNQSFNLGNGNGVSLTLGLQQHGGSGVSLAFPQATQSSMFYTRDQNDEECQPIHYSILDGETQSNMPYRNLIGTHLLHDLAG 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1411 625 Coils Coil 262 282 - -
Lal15g1411 625 Pfam Homeobox KN domain 399 449 IPR008422 GO:0003677|GO:0006355
Lal15g1411 625 SMART prehox3 201 330 IPR006563 -
Lal15g1411 625 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 579 - -
Lal15g1411 625 Gene3D - 385 458 - -
Lal15g1411 625 Pfam Associated with HOX 207 328 IPR006563 -
Lal15g1411 625 SUPERFAMILY Homeodomain-like 383 459 IPR009057 -
Lal15g1411 625 SMART HOX_1 382 457 IPR001356 GO:0003677
Lal15g1411 625 CDD homeodomain 382 454 IPR001356 GO:0003677
Lal15g1411 625 ProSiteProfiles 'Homeobox' domain profile. 379 453 IPR001356 GO:0003677
Lal15g1411 625 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 2 579 - -
Lal15g1411 625 MobiDBLite consensus disorder prediction 165 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1411 Lal-Chr15 16254899 16259853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1411 129 624 Homeobox Transcription Factor Family AT5G41410 45.985 1.66e-126 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1411 - - gmx:100800542 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g1411 15 16254899 16259853 Lal15g1411 15 16254899 16259853 ECH
Lal16g1200 16 8261263 8264443 Lal15g1411 15 16254899 16259853 LSH
Lal16g0091 16 531005 536325 Lal15g1411 15 16254899 16259853 PCT
Lal23g1534 23 15485835 15492121 Lal15g1411 15 16254899 16259853 PCT