Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1408 ATGGGATTCCCAATTGGGTACTCAGAATTTTTGTTCCCAAAACTTATTCTCCAAATCCTCTCTCTCCTTTCTTTCATCAGAAAACTAATTTCCACTTTCTTCCAATACATTGGTCTTCAACATTTCATCGAACCGGACACTTCCGGTTCTTATAACCCGAACCGGGTTCCTGAATTTAACTCGGTTCATGCTCTCCTTATCCGTGAAATCCTTCCCGTTGTTCGGTTCGGTGAATTAGTGGGCCCACCTGACACCTGTGCTGTGTGTCTTCGCGACTTCGACGAAGACGATGAGATCCGACGGCTATCCAACTGTACACATGTTTTTCACCGAGGTTGTCTGGACCGTTGGATGGGGTATGATCACAGAACGTGTCCTTTATGCCGTACACCATTTTTACCAATCCTTAGCGAAGTAACTAATCGGTCGTGA 432 0.4537 MGFPIGYSEFLFPKLILQILSLLSFIRKLISTFFQYIGLQHFIEPDTSGSYNPNRVPEFNSVHALLIREILPVVRFGELVGPPDTCAVCLRDFDEDDEIRRLSNCTHVFHRGCLDRWMGYDHRTCPLCRTPFLPILSEVTNRS 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1408 143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 133 IPR013083 -
Lal15g1408 143 SMART ring_2 86 128 IPR001841 -
Lal15g1408 143 PANTHER BRH1 RING FINGER PROTEIN 1 135 - -
Lal15g1408 143 Pfam Ring finger domain 84 129 IPR001841 -
Lal15g1408 143 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 135 - -
Lal15g1408 143 ProSiteProfiles Zinc finger RING-type profile. 86 129 IPR001841 -
Lal15g1408 143 SUPERFAMILY RING/U-box 66 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1408 Lal-Chr15 16218695 16219126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1408 1 134 C3H Transcription Factor Family AT1G63840 56.522 6.65e-50 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1408 K16281 - jre:109014495 195.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g1408 15 16218695 16219126 Lal15g1408 15 16218695 16219126 ECH
Lal15g0066 15 457075 457569 Lal15g1408 15 16218695 16219126 PCT
Lal23g1532 23 15467206 15467694 Lal15g1408 15 16218695 16219126 PCT