Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1391 ATGGAAATGGTTCCAGAGAACATTAAGAGACAACTTTCTTTGGCTGTAAGGAGCATACAGTGGATCTATGCAATTTTCTGGTCTGGTTCAGATACCAACCCCAGGGTCTTGAGCTGGGGTGATGGATATTACAATGGAGACATTAAGACTCGGAAAACAAATCAAGGATTCGAACTTAATTCTGACCAAATTGGGTTGCAGAGGAGTGAGCAACTGAGAGAGCTATTCAGATCCTTCAAAACTACAGAAGCAACTAAAAAGCCTTCAGCAACACTTCCCCCTGAAGATCTCACTGATACTGAGTGGTATTATTTGGTTTGCATGTCCTTTGTATTCAACATTGGTCAAGGGTTACCTGGAAGAACTCTAGCGAACGACCGGCCTATTTGGTTGTGCAACGCGCATTCTACAGATTGTATAATTTTTAGTCGCTCTCTGCTGGCTAAGACAGTGGTGTGTTTTCCATTTATGGAAGGGGTTGTTGAGTTAGGTACAACTGATCTTGTGCAAGAAGATCTTAGTCTTATTCAACATATCAGAACTTCCTTCTTGAATATTCTGGAAGTTGATGTTCCTAAAAAGACAGGAGCTACATTGAACACGAGAAACGAGGAAGATGTTGCGTGCACAGCATTGGATCAAAATGCTTATAATGTTAAATCAACTGCAGAAGTTGGAAATGATGTAATCAACACAACCTCTCCTAATATTTCAGACGCGTTACAAGCTAATCAAGCAGCAGATGAATCATTGATGGTTGAAGCCTGGCAAGTTATGGATGATGAATTAAGCAATTGTGTCCATAACTCCATGAATTCTAGTGACTGTATATCTCAAACTTTTGTTAGTCCCGAGAAAATTGCTTCTGTTGCCAATGGTGAAGCTACTAATGATCATTATGGCCAAGACCTTCAAAAGTTCAATAGCAAAAACATGACCTTAGTGGATCCACAAAGTGATGATTGGCATTATCAGAGTGTTCTTTCTACCCTTCTAAAAAGCTCAGACCAGTTAACTATGGGAACACATTTCCAAAATTTTCGTCAGGAATCTAGCTTTGTCAGTTGGAAGAAAGGAGGGCCGATGGATTGCCAAAGGCCAAGAGCAGGAAAATCACAAAATTTATTGAAGAAAGTATTGTTCGAAGTTCATCGGATGCACTTGGAGGGGTTGCTTGAATCTCAAGAAGAGAATGACTATAAAGACGGAACGAGACCGGAGGTAGACGAAAATGGCACAAACCATGTTTTGTCAGAAAGAAGGAGAAGAGCGAAACTAAATGAAAGGTTTTTAACCCTTAGATCAATGGTCCCTTCAATTAGTAAGGATGACAAGGTTTCAATACTTGATGATGCAATAGAATACCTTAGAAAGCTTGAGAAAAGGATAAGAGACTTAGAAGCTCAAAGGGAGATAATAGATATAGAGGCTAGAACTAAAAGATCACCTCAAGATATGGTAGAGAGGACTTCTGATAATTATTTCAACAAAAGTGATAGTAATGGCAAGAAGCCAGCGAGTAAAAAGAGGAAGGTTTGTGATATTGATGTGCCACGCGTAGAAATTATTTCGGATGCTTTTAAAGGTAGCTCTACTAATGATGTCACTGTCAGTGTGAATGGCAATGAAGTTTTAATAGAAATGAAGAGACTTTGTAGACAAGGAAGGGTGCTAGAAATTATAGAAGCAGTTAGCTCTCTCAATTTAGATCTTAATTCAGTTCAGTCAACAGAAGCTGATGGGAATCTTTATCTGAAAATTAAATCTAAGTTCAAAGGACCAACTATTGCATCAGCAAAAAAGATCAAACAAACACTCCAAAGAGTGGCTCCCTAG 1836 0.3905 MEMVPENIKRQLSLAVRSIQWIYAIFWSGSDTNPRVLSWGDGYYNGDIKTRKTNQGFELNSDQIGLQRSEQLRELFRSFKTTEATKKPSATLPPEDLTDTEWYYLVCMSFVFNIGQGLPGRTLANDRPIWLCNAHSTDCIIFSRSLLAKTVVCFPFMEGVVELGTTDLVQEDLSLIQHIRTSFLNILEVDVPKKTGATLNTRNEEDVACTALDQNAYNVKSTAEVGNDVINTTSPNISDALQANQAADESLMVEAWQVMDDELSNCVHNSMNSSDCISQTFVSPEKIASVANGEATNDHYGQDLQKFNSKNMTLVDPQSDDWHYQSVLSTLLKSSDQLTMGTHFQNFRQESSFVSWKKGGPMDCQRPRAGKSQNLLKKVLFEVHRMHLEGLLESQEENDYKDGTRPEVDENGTNHVLSERRRRAKLNERFLTLRSMVPSISKDDKVSILDDAIEYLRKLEKRIRDLEAQREIIDIEARTKRSPQDMVERTSDNYFNKSDSNGKKPASKKRKVCDIDVPRVEIISDAFKGSSTNDVTVSVNGNEVLIEMKRLCRQGRVLEIIEAVSSLNLDLNSVQSTEADGNLYLKIKSKFKGPTIASAKKIKQTLQRVAP 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1391 611 PANTHER TRANSCRIPTION FACTOR EGL1 3 609 - -
Lal15g1391 611 SMART finulus 416 465 IPR011598 GO:0046983
Lal15g1391 611 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 410 459 IPR011598 GO:0046983
Lal15g1391 611 MobiDBLite consensus disorder prediction 395 420 - -
Lal15g1391 611 MobiDBLite consensus disorder prediction 480 510 - -
Lal15g1391 611 Gene3D - 403 475 IPR036638 GO:0046983
Lal15g1391 611 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 413 474 IPR036638 GO:0046983
Lal15g1391 611 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 183 IPR025610 -
Lal15g1391 611 Coils Coil 449 476 - -
Lal15g1391 611 Pfam Helix-loop-helix DNA-binding domain 413 460 IPR011598 GO:0046983
Lal15g1391 611 PANTHER TRANSCRIPTION FACTOR TT8 3 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1391 Lal-Chr15 16085968 16091286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1391 4 610 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 44.104 2.27e-170 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal15g1391 bHLH-MYC_N 1.7e-45 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1391 - - gmx:100808167 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g1391 15 16085968 16091286 Lal15g1391 15 16085968 16091286 ECH
Lal16g1210 16 8413309 8417823 Lal15g1391 15 16085968 16091286 LSH