Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1384 ATGGATGGTAGAGAAGCTATGGCATTTTCTGGTGGGAAAAGTTCATATTACATACATAGAGAAGGGGTTTCAGGGTCTAGTGGGGGGTTTCATGCACCCCCTCCTGGTTTTAGAGCTTTGTCAAACACTGGCATTCAAGCTCAGTCAAATGTAACTAGGGGTGATGGTGGTTCTTCTGCTTCTACGTTTTCAGCGGTAGAACCTCAATTTCGCCCGAGTTTTAGTCACGGTGGAATTAACATTGGCGGTGTTTCTTCTGGTGGGGTACAACCTCTTACGTCTTCGGTTGAGAATGTGAAGAAGAAAAGAGGGAGACCCCGGAAATATGCTCCTACTGATGGAGCTGTTTCTTTGAAACTGTCTCCATTCTCCGGCACTGCTAATTCTTCAACACTGAGTTCAACCAAACCTTCGGAGAAAAGGGCTAGAGGGCGTCCTCCTGGATCTGGAAGGAAGCAACAACTAGCATCTCTAGGTGAATGGATGAACAATTCAGCAGGGCAGGCTTTTTCACCACATGTTATCTCCATTGGAGTTGGGGAGTTCTATGTTCTTTTTCTCAATCTTGAAATAATTAAAGACATTGTAGCAAAGTTATTGTCATTGTCACAGCAGAAACAAAGGGCTCTGTGCATCTTATCGGGCACTGGGACAGTTTCTTCAGTTACTCTTCGACATCCTGCTTCTACCAATGCCAGTAAAACTTTCGAGGGCCGATTCCAAATATTATGCTTGTCTGGTTCCTACTTGGTTACTGAAGACGGTGGACCATCCGATAGAAAAGGCGGCATAAGTGCTTCCCTTTCAAGCCCTGATGGTCACGTTATTGGCGGCGGTGTTGCTGCGCTTATCGCTGGCAGCCCGGTGCAGGTGGTAGTGTCCAGTTTCCTATATGGTGGTAAAATGAAGACTAAGCAAGAGAATGTTACCAAAGATGACGAAAGTTCTGAGCCTCAGCATACCAATAAGTTAGCTTCTCCAGCCACTCAAAACTACATCCCTTCATCAGGCATGTGGCATGGACCGCAATCAGAAAATGTGAAAAGCGAACAAATTCATACCGGTATCGACTTAAGGCGAGGGTGA 1086 0.4586 MDGREAMAFSGGKSSYYIHREGVSGSSGGFHAPPPGFRALSNTGIQAQSNVTRGDGGSSASTFSAVEPQFRPSFSHGGINIGGVSSGGVQPLTSSVENVKKKRGRPRKYAPTDGAVSLKLSPFSGTANSSTLSSTKPSEKRARGRPPGSGRKQQLASLGEWMNNSAGQAFSPHVISIGVGEFYVLFLNLEIIKDIVAKLLSLSQQKQRALCILSGTGTVSSVTLRHPASTNASKTFEGRFQILCLSGSYLVTEDGGPSDRKGGISASLSSPDGHVIGGGVAALIAGSPVQVVVSSFLYGGKMKTKQENVTKDDESSEPQHTNKLASPATQNYIPSSGMWHGPQSENVKSEQIHTGIDLRRG 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1384 361 MobiDBLite consensus disorder prediction 307 361 - -
Lal15g1384 361 Gene3D - 184 315 - -
Lal15g1384 361 MobiDBLite consensus disorder prediction 20 154 - -
Lal15g1384 361 MobiDBLite consensus disorder prediction 119 137 - -
Lal15g1384 361 SUPERFAMILY AF0104/ALDC/Ptd012-like 183 298 - -
Lal15g1384 361 Pfam Plants and Prokaryotes Conserved (PCC) domain 186 296 IPR005175 -
Lal15g1384 361 ProSiteProfiles PPC domain profile profile. 179 319 IPR005175 -
Lal15g1384 361 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 361 IPR039605 GO:0003680
Lal15g1384 361 SMART AT_hook_2 100 112 IPR017956 GO:0003677
Lal15g1384 361 SMART AT_hook_2 140 152 IPR017956 GO:0003677
Lal15g1384 361 MobiDBLite consensus disorder prediction 320 351 - -
Lal15g1384 361 MobiDBLite consensus disorder prediction 41 69 - -
Lal15g1384 361 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 361 - -
Lal15g1384 361 CDD DUF296 172 296 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1384 Lal-Chr15 16004159 16007742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1384 1 361 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 47.382 6.32e-85 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1384 - - gmx:100813888 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g1384 15 16004159 16007742 Lal15g1384 15 16004159 16007742 ECH
Lal16g1216 16 8472536 8476545 Lal15g1384 15 16004159 16007742 LSH
Lal16g0099 16 572389 576387 Lal15g1384 15 16004159 16007742 PCT