Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1373 ATGGCGGCGACAGGTTCATCGAACCGCTACACCGACGACGCCGCCACCGATCGGACACCGATTCTCGGAAACTCCGGCGGCTCCTCCGACGAATCCAACCGATTCTCACGGCGGCAAGGGTTACGTCAAGCGGCACGGTTCCTCCGGCAAGCGAGTGGCCAGAGGATGATGCGTGAGCCGTCAATGGTGGTGAGAGAAACGGCGGCGGAGCAATTGGAGGAGCGGCAGAGCGATTGGGCTTATTCAAAACCCGTGGTGGTGTTAGATATTCTATGGAACTTCGCGTTTGTTGTTACCGGTGCTACGGTGTTGATTCTGAGTGTGAACGAAATTCCGAGCATGCCTTTAACGGTGTGGGTTATTGGTTATGCTCTGCAGTGTATTCTTCATGTGGTTTGTGTTTGTATTGAGTTTAGGAAGCGGAGAAGGAATCGGAGGGAAGAATCGAACGCTGCCACGGCGGCACAAGACGGTGTCGATGGAAGTGAGGATTTGAGCTCTGGTTCTGGACAATATGAGTTAATGTCCCAATTAGATGAAGAGGGTACAAGTGTGGCGAAGCGTTTGGAATCAGCCAACACAATGTTTTCATTTATTTGGTGGGTCGTTGGATTCTATTGGGTTTCAGCTGGTGGTCAAGATATGGCCCAAGATTCTCCTCTGCTATACTGGCTATGCATAGTCTTCCTGGGGTTTGATGTTTTCTTTGTCGTTTTCTGTGTTGCGCTGGCCTGCCTCGACGGGGCAACGAAAAAAGACATTGAGCACTTGTCAAAATTCACATTCCGAAGAGTTGCAAATGATGAGAAACTTGCTGGTAATACCGGTGGACCTGCTGGTGGAATAATGACTGAATGTGTGGCTGATTCACCTAGTGAACAAGATCTTTGTGATGAAGATGCAGAATGTTGCATCTGTCTTTCAGAATATGAAGATGGGGCTGAACTAAGAAAACTTCCTTGTGGTCACCATTTTCACTGTACCTGTGTGGACAAATGGCTGCATATTAATGCTACTTGCCCTCTCTGCAAGTATAACATCTTAAAAAGTACTGAGGAAGTGTAG 1065 0.4845 MAATGSSNRYTDDAATDRTPILGNSGGSSDESNRFSRRQGLRQAARFLRQASGQRMMREPSMVVRETAAEQLEERQSDWAYSKPVVVLDILWNFAFVVTGATVLILSVNEIPSMPLTVWVIGYALQCILHVVCVCIEFRKRRRNRREESNAATAAQDGVDGSEDLSSGSGQYELMSQLDEEGTSVAKRLESANTMFSFIWWVVGFYWVSAGGQDMAQDSPLLYWLCIVFLGFDVFFVVFCVALACLDGATKKDIEHLSKFTFRRVANDEKLAGNTGGPAGGIMTECVADSPSEQDLCDEDAECCICLSEYEDGAELRKLPCGHHFHCTCVDKWLHINATCPLCKYNILKSTEEV 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1373 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 354 IPR013083 -
Lal15g1373 354 MobiDBLite consensus disorder prediction 147 167 - -
Lal15g1373 354 SUPERFAMILY RING/U-box 294 350 - -
Lal15g1373 354 PANTHER TARGET OF ERK KINASE MPK-1 247 352 - -
Lal15g1373 354 PANTHER TARGET OF ERK KINASE MPK-1 3 246 - -
Lal15g1373 354 Pfam Ring finger domain 302 344 IPR001841 -
Lal15g1373 354 SMART ring_2 303 343 IPR001841 -
Lal15g1373 354 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 246 - -
Lal15g1373 354 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 247 352 - -
Lal15g1373 354 MobiDBLite consensus disorder prediction 1 38 - -
Lal15g1373 354 CDD RING-H2_RNF111_like 302 346 - -
Lal15g1373 354 ProSiteProfiles Zinc finger RING-type profile. 303 344 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1373 Lal-Chr15 15859046 15864486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1373 25 353 C3H Transcription Factor Family AT1G68070 45.658 2.31e-98 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1373 - - gmx:100790497 483.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g1373 15 15859046 15864486 Lal15g1373 15 15859046 15864486 ECH
Lal15g1373 15 15859046 15864486 Lal16g1235 16 8614040 8619213 LSH