Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1347 ATGTCATCTTCTTCAACTACATTATCACTGGACCACCTCTCTCCTTCTGAACAGCTTTGTTATGTTCATTGCAACATTTGTGACACAGTTCTTGCTGTAAGTGTACCATGTACAAGCTTGTTCAAGACTGTGACTGTCCGATGCGGTCATTGCACCAACCTTCTGCCGGTGAACATGCGTGGACTGCTTCTACCTTCGCCCAATCAATTTCATTTGGGTCACTCTTACTTCTCTCCCTCTCATAACCTTCTGCAGGAGGAGATGTCAAACCCTACCCCAAATTTTTTCATGAATCAGAATACAAACATAGCTAATGACTTCTCTATGCCTGCAAGAACTACAGTTGATGAGCTTCCACGGCCACTTATCATTAATAGACCTCCTGAGAAGAGACAGAGAGTCCCCTCTGCTTACAACCGCTTCATCAAGGATGAGATCCAACGAATCAAGGCTATTAATCCAGATATAACCCACAGGGAAGCTTTCAGTGCAGCTGCAAAGAATTGGGCCCACTTCCCACACATTCACTTTGGTCTCATGCCTACTGATCAAACAGTGAAGAAGACAAATGTGCACCAGCAACAGGAAGGAGAAGAAGTTCTTATCAAAGAAGGTTTTTATGCTTCACCTAATGTTGGTTTTTCACCCTACTAA 654 0.4358 MSSSSTTLSLDHLSPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQFHLGHSYFSPSHNLLQEEMSNPTPNFFMNQNTNIANDFSMPARTTVDELPRPLIINRPPEKRQRVPSAYNRFIKDEIQRIKAINPDITHREAFSAAAKNWAHFPHIHFGLMPTDQTVKKTNVHQQQEGEEVLIKEGFYASPNVGFSPY 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1347 217 PANTHER PROTEIN YABBY 6-RELATED 1 214 IPR006780 GO:0007275
Lal15g1347 217 Pfam YABBY protein 15 179 IPR006780 GO:0007275
Lal15g1347 217 Gene3D High mobility group box domain 124 175 IPR036910 -
Lal15g1347 217 SUPERFAMILY HMG-box 125 172 IPR036910 -
Lal15g1347 217 PANTHER PROTEIN YABBY 4 1 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1347 Lal-Chr15 15594866 15599624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1347 26 215 C2C2-YABBY Transcription Factor Family AT4G00180 56.459 7.92e-59 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lal15g1347 YABBY 1.5e-71 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1347 K25796 - gmx:100798441 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g1347 15 15594866 15599624 Lal15g1347 15 15594866 15599624 ECH
Lal15g1347 15 15594866 15599624 Lal16g1282 16 9030821 9036103 LSH