Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1319 ATGTCTTCTGCCGCCGGCGGTGGAAGCAGCGGCGCCACTAACGCCACCGCTCCTCCTCACCAATATTTCTGTTATCAGTGCAACCGCACAGTCTCCATCACTCCCTCCTCCGATCTCGCCTGTCCCGATTGCAACAGCGGCTTCGTCGAAGAAGTCGAAAACCCTATCCCTCAACCACAGCCTTTCTCCTTCACCTATGAATTCGGCGGTGGCGGTGGCGGCGATGATCTCCCTTCCCTCTTCGGCGGCCGATCTCATATCCGCGAGGTCGAGACTTTCAACCCTCTCGTCTTTCTCCAGAACTACATCCAAACCCTAAGAGCCGGCGGCGCAAACGTTCAATTCGTCATCGATAACTCCGCGTCGGGTCTTCCGGCGAATCTCAACCTCGGCGATTACTTCTTCGGCTCCGGCCTCGAGCAATTGATTCAGCATCTCGCCGAGAATGATCCAAACCGGTACGGTACACCTCCGGCTTCAAGGAACGCTGTCGAGGGCCTCCCGGAAATCGCAATCACTGAGGAATTGCTGGCTTCCGATTCATCGCAATGTGCTGTGTGTAAAGACACGTTCGAGCTAAATGAAATCGCTAAGGAATTGCCTTGTAAGCACATTTATCATTCTGATTGCATACTTCCATGGTTGGAATTGCATAATTCTTGCCCTGTGTGTCGTTACGAGTTACCGACGGATGATCCTGACTATGAGCAGAGGGCTCAGGGTGGTGGTGGCGAGGGTGCGGTTGAGATGAATCAGAATCAGGATCAGTCTGCTGCTGGAGATAGCTCGCAAACGCAGTTGCAGTCGCCGAGGGAGCACAGGTTTAGGGTTGCTTTGCCTTGGCCGTTTAGGCAATTTTCTGGAGATACAAGCAATGTTGGGACAGGGAATGATAATAACACTGGCGGGGAATCAAATCCTGGAAGTGTTGTTGTTGTTGCCATTGAGTTAGCAATGACCAAGTATTGGGAACTTTTTGTGCAGAAAGTAGTTCTCAAGCGGATAGGGTTGCATTTTTGGCTTCGCTCTGGTGCAAGACCCTTTGCTGGTGTTGTAGATATGCAGAGAGGCTGGCATGCTCTGTTACATGACCCTTTTGCTTAG 1104 0.519 MSSAAGGGSSGATNATAPPHQYFCYQCNRTVSITPSSDLACPDCNSGFVEEVENPIPQPQPFSFTYEFGGGGGGDDLPSLFGGRSHIREVETFNPLVFLQNYIQTLRAGGANVQFVIDNSASGLPANLNLGDYFFGSGLEQLIQHLAENDPNRYGTPPASRNAVEGLPEIAITEELLASDSSQCAVCKDTFELNEIAKELPCKHIYHSDCILPWLELHNSCPVCRYELPTDDPDYEQRAQGGGGEGAVEMNQNQDQSAAGDSSQTQLQSPREHRFRVALPWPFRQFSGDTSNVGTGNDNNTGGESNPGSVVVVAIELAMTKYWELFVQKVVLKRIGLHFWLRSGARPFAGVVDMQRGWHALLHDPFA 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1319 367 MobiDBLite consensus disorder prediction 286 305 - -
Lal15g1319 367 Pfam zinc-ribbon 21 51 IPR039525 GO:0061630
Lal15g1319 367 CDD RING-H2_RNF126_like 183 225 - -
Lal15g1319 367 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 13 61 - -
Lal15g1319 367 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 75 293 - -
Lal15g1319 367 Pfam Ring finger domain 183 225 IPR001841 -
Lal15g1319 367 SUPERFAMILY RING/U-box 164 231 - -
Lal15g1319 367 SMART ring_2 184 224 IPR001841 -
Lal15g1319 367 MobiDBLite consensus disorder prediction 247 269 - -
Lal15g1319 367 ProSiteProfiles Zinc finger RING-type profile. 184 225 IPR001841 -
Lal15g1319 367 MobiDBLite consensus disorder prediction 235 269 - -
Lal15g1319 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 231 IPR013083 -
Lal15g1319 367 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 13 61 - -
Lal15g1319 367 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 75 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1319 Lal-Chr15 15124301 15125868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1319 125 237 C3H Transcription Factor Family AT5G01980 49.558 7.79e-33 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1319 - K11982 lang:109333167 542.732