Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1312 AACCCCAAAAGACGCTTTCGTTTCACTGCCAATCTTTCCAAACGTGGCGAAGCTGCTGCTATGCGTCGTACCAATCAGGAAAAGCTAAGGGTTGCTGTTTTGGTTTCCAAAGCTGCATTTCAATTTATCGAAGGCAATGTACCAGAGGAAGTTAAAGCTGCAGGTTTTCAAATCTATGCTGATGAATTGGGGTCTATAGTTGAAGGCCATGATGTAAAGAAGCTGAAATTTCATGGTGGAGTTAGTGTTGGCATAGCAACTGAAGAATGGCCTAAGGGAGCTCATGATGGACTTGGAATTGCTGCAAGTATCTTACTTGTTGTGTTTGTTACAGCAACGAGCGATTATCGGCAATCGTTACAGTTCAAAGATTTAGATAAAGAGAAGAAAAAGATTTCTATTCAGGTCACAAGAAATGGTTATAGGCAGAAAATGTCAATATATAATTTACTGCCTGGAGATCTTGTGCATCTTGGTGGAGATGATGAAACCCCATTGCAAGTTAAACTGAATGGAGTTGCAACCATTATCGGTAAGATAGGCCTATTCTTCGCGGTGGTAACTTTCGCAGTTTTGGTGAAAGGACTAATGAGCCGCAAAATCCGAGAAGGAAGATTCTGGTGGTGGTCTGGGGATGATGCCATTGAGATGTTGGAATTCTTTGCTATTGCAGTTACCATAGTTGTTGTTGCTGTTCCAGAGGGGCTACCCTTAGCTGTGACATTGAGCCTTGCGTTCGCGATGAAGAAAATGATGAATGATAAAGCCCTTGTTAGACATTTAGCAGCATGTGGGACTATGGGATCAGCCACAACTATAGGAGTTGTTGGTATCAAAGATCCGGTTCGCCCCGGTGTTAAGGAATCCGTTGCGGTGTGTCGTTCGGCTGGAATTATAGTAAGGATGGTTACAGGTGACAATATTAATACTGCAAAGGCTATAGCAAGAGAATGTGGAATTTTAACAGATGATGGCATAGCCATTGAAGGTCCAGATTTTAGAGAGAAGACTCAGGAGGAAATGTTTGAACTTATTCCCAAAATTCAGCCTTTAGACAAGTATACATTGGTTAAACAACTTCGTACCACGTTCGGCGAAGTTGTTGCTGTAACTGGTGATGGAACAAATGATGCTCCAGCCCTTCATGAAGCTGACGTTGGACTTGCAATGGGAATTGCTGGAACTGAGGTTGCTAAAGAGAGTGCAGATGTCATAATTTTGGATGATAATTTCTCCACAATAGTGACAGTGTGCAAATGGGGACGTTCAGTTTACATAAATATTCAGAAATTTGTACAGTTCCAGCTGACTGTTAATGTGGTTGCATTACTAGTGAACTTCTCATCAGCCTGCATGACAGGTTTGAAAATTAGGCTAATTTGTAAATCAATCACTAATAAATAA 1404 0.4138 NPKRRFRFTANLSKRGEAAAMRRTNQEKLRVAVLVSKAAFQFIEGNVPEEVKAAGFQIYADELGSIVEGHDVKKLKFHGGVSVGIATEEWPKGAHDGLGIAASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYNLLPGDLVHLGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVKGLMSRKIREGRFWWWSGDDAIEMLEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACGTMGSATTIGVVGIKDPVRPGVKESVAVCRSAGIIVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKTQEEMFELIPKIQPLDKYTLVKQLRTTFGEVVAVTGDGTNDAPALHEADVGLAMGIAGTEVAKESADVIILDDNFSTIVTVCKWGRSVYINIQKFVQFQLTVNVVALLVNFSSACMTGLKIRLICKSITNK 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1312 467 Gene3D - 1 44 - -
Lal15g1312 467 Pfam haloacid dehalogenase-like hydrolase 179 385 - -
Lal15g1312 467 Gene3D - 79 272 - -
Lal15g1312 467 PANTHER CALCIUM-TRANSPORTING ATPASE 1 81 - -
Lal15g1312 467 PANTHER CALCIUM-TRANSPORTING ATPASE 271 454 - -
Lal15g1312 467 PANTHER CALCIUM-TRANSPORTING ATPASE 83 158 - -
Lal15g1312 467 PANTHER CALCIUM-TRANSPORTING ATPASE 159 273 - -
Lal15g1312 467 PRINTS P-type cation-transporting ATPase superfamily signature 274 285 - -
Lal15g1312 467 PRINTS P-type cation-transporting ATPase superfamily signature 296 306 - -
Lal15g1312 467 PRINTS P-type cation-transporting ATPase superfamily signature 371 390 - -
Lal15g1312 467 PRINTS P-type cation-transporting ATPase superfamily signature 395 407 - -
Lal15g1312 467 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 345 452 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal15g1312 467 PANTHER CATION TRANSPORTING ATPASE 1 81 - -
Lal15g1312 467 PANTHER CATION TRANSPORTING ATPASE 83 158 - -
Lal15g1312 467 PANTHER CATION TRANSPORTING ATPASE 271 454 - -
Lal15g1312 467 PANTHER CATION TRANSPORTING ATPASE 159 273 - -
Lal15g1312 467 SUPERFAMILY HAD-like 247 455 IPR036412 -
Lal15g1312 467 PRINTS H+-transporting ATPase (proton pump) signature 371 387 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal15g1312 467 PRINTS H+-transporting ATPase (proton pump) signature 403 428 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal15g1312 467 Gene3D - 273 416 IPR023214 -
Lal15g1312 467 SUPERFAMILY Calcium ATPase, transmembrane domain M 84 453 IPR023298 -
Lal15g1312 467 Pfam E1-E2 ATPase 162 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1312 Lal-Chr15 15041516 15046246 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1312 271 454 Primary Pumps ATPases AT4G37640 87.368 1.41e-106 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1312 K01537 - gmx:100815662 341.658