Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1311 ATGGATCACAAATGCAATGTATCTCTCCTTGATGCTAAGAAAAATATTCCAGCACCACCTCCTTCGCCTCGATCGATGGCCGCCGATTGTCGTTGCAAGTGTGTGGATAAGAATAATCCACCTGCAAGAATAGACAGCAATGTGTTTCCAGCAACAAGAGATTTGTGGGAGAGACTTTACAATGAAGGTTATAAAGCAGATGTTTACATTAGTACTGATAATGGTGGCATTATTTATGCTCATTCTATCATTCTTGCCACAGCTTCTCCTGTATTGAAAGGCATGTTGAAGCAAGCAAATCGTCATCACCATTGGCGACCGATCTCAATATCCGGGGTTCCTCATGACGCAGTACGAGTTTTCGTTCGCTACTTGTACTCCTCTTGTTATGAGAAAGAAGAAATGGAGCAATTCACCTTACATTTGTTGGTGCTGTCACATGTATTTGTGGTTCCTCAGTTGAAGCATGAATGCCAACATAAGCTAGAGTTGGGTTTCCTAACCATAGCTAATGTTGTTGATTTACTTCAACTCTCTTTACTATGCGATGCTCCTCGGCTTGTCCTCGTTTGTCGCCGTAAAATACTACAAAATTTTAAAGCAGTTTCAGAGTCAGAAGGGTGGAAAGTAATGAAGCAAAGTCACCCAGTTCTAGAGAAGGAACTTCTTGAGTCTTTGGCTGAAGAAGAAAATAGAAAAACGATGAACACACGAAGGAATAATGAGAGGATGATCTATCGGCAATTATACGAGGCAATGGATGCTCTTGTTCACATATTTAGCGATGGTTGTCGAACAATTGGCCCGCATGATAAGGACTTCAAAGCAAACCAGGCACCGTGTCGTTATGCAGCTTGCAAAGGGCTAGAATTGCTTGTTCGCCATTTTGCTGACTGCAAGTTGAGATTGCCAGGAGGTTGTGTTCATTGCAAGAAAATGTGGCAAGTATTGGAGCTTCACTCTCGACTATGTGTCGATCCAGATCAATGTAGAGTTCCTCTTTGCAGGAAGTTTAAGCAGCGAATATTAAGACAAAGAAAGAAAGACAATGTTAAGTGGAAAATATTGGTTGAGAAGATCTTCAGAACAAGGGGCATTGTTTTAGCACCATGCTTTCAGAGGCAATAA 1128 0.4158 MDHKCNVSLLDAKKNIPAPPPSPRSMAADCRCKCVDKNNPPARIDSNVFPATRDLWERLYNEGYKADVYISTDNGGIIYAHSIILATASPVLKGMLKQANRHHHWRPISISGVPHDAVRVFVRYLYSSCYEKEEMEQFTLHLLVLSHVFVVPQLKHECQHKLELGFLTIANVVDLLQLSLLCDAPRLVLVCRRKILQNFKAVSESEGWKVMKQSHPVLEKELLESLAEEENRKTMNTRRNNERMIYRQLYEAMDALVHIFSDGCRTIGPHDKDFKANQAPCRYAACKGLELLVRHFADCKLRLPGGCVHCKKMWQVLELHSRLCVDPDQCRVPLCRKFKQRILRQRKKDNVKWKILVEKIFRTRGIVLAPCFQRQ 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1311 375 CDD BACK 168 209 - -
Lal15g1311 375 Gene3D - 167 238 - -
Lal15g1311 375 SUPERFAMILY POZ domain 48 196 IPR011333 -
Lal15g1311 375 SUPERFAMILY TAZ domain 245 342 IPR035898 -
Lal15g1311 375 Gene3D Potassium Channel Kv1.1; Chain A 51 165 IPR011333 -
Lal15g1311 375 Gene3D TAZ domain 239 363 IPR035898 -
Lal15g1311 375 ProSiteProfiles BTB domain profile. 66 134 IPR000210 GO:0005515
Lal15g1311 375 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 4 2 373 - -
Lal15g1311 375 Pfam BTB/POZ domain 60 162 IPR000210 GO:0005515
Lal15g1311 375 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 2 373 IPR044513 -
Lal15g1311 375 SMART TAZ_2 243 336 IPR000197 -
Lal15g1311 375 SMART BTB_4 66 166 IPR000210 GO:0005515
Lal15g1311 375 Pfam TAZ zinc finger 250 335 IPR000197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1311 Lal-Chr15 15032691 15036734 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Lal15g1311 BTB 3.4e-11 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1311 - - lja:Lj2g3v1968190.1 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g1311 15 15032691 15036734 Lal15g1311 15 15032691 15036734 ECH
Lal15g1311 15 15032691 15036734 Lal23g1296 23 13957669 13963530 LSH
Lal16g0282 16 1685948 1686679 Lal15g1311 15 15032691 15036734 PCT
Lal15g0818 15 6005998 6006858 Lal15g1311 15 15032691 15036734 PCT
Lal15g1311 15 15032691 15036734 Lal16g0282 16 1685948 1686679 PCT
Lal15g1311 15 15032691 15036734 Lal15g0818 15 6005998 6006858 PCT