Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1309 ATGGCCATAAGGCCCTTTCAATTAACCTTCTCTCGCAATAATCCATTCCTCTTTCTCTTCCCCACTTCTCAATCTTTCTCATTTCCCTCTTCTCCTTTTCCCAACCCTTTCTTTCTCCGCCACTTCGCTTCTTCCGCCGCCCCACCTTCGCCGCCGCTTCCCCACGACCTCCGCCGACGCTTTCGCCCTCCGCCACCGCCACACGACACCCTGGCGCAGAAGATTGGGAAAGCCACTCGCCGCCCTGGCGCTCCCTCCAAAGCTAGGGTTTATTCCGATGTCAACGTTGTTCGCCCTAAGGAATATTGGGACTATGAAAACCTCACCGTTCAGTGGGGGGAGCAAGATGATTATGAGGTGGTGAAGAAGGTGGGAAGGGGAAAATACAGTGAGGTGTTTGAGGGTGTTCACTGTACCAATAATGAAAAGTGTGTCATTAAGATCCTGAAACCTGTGAAGAAGAAGAAGATCAAGAGGGAAATCAAAATATTGCAGAATCTTTGTGGAGGGCCCAATATTGTGAAGTTGCATGACATCGTTAGAGACCAGCAGTCGAAGACCCCAAGCTTTATATTTGAACATGTTAATAATACTGATTTTAAAGTGCTATATCCTACATTATCAGACTATGATATCCGATATTATATTCTTGAACTTCTAAAGGCACTGGATTATTGCCACTCACAAGGAATCATGCATCGGGATGTAAAGCCACACAATGTGATGATTGATCATGAACAGCGTAAGCTTCGCCTTATAGATTGGGGTCTTGCTGAGTTCTATCATCCTGGGAAAGAATATAATGTTCGCGTTGCTTCAAGATATTTCAAAGGTCCTGAACTTCTTGTTGATCTTCAAGACTATGATTACTCTTTAGACTTATGGAGTCTTGGTTGTATGTTTGCTGGGATGATATTCCGCAAGGAGCCTTTCTTCTATGGGCATGATAACTATGATCAACTGGTCAAAATAGCTAAGGTTCTTGGGACAGATGAATTAAGTGCATATTTGAATAAATACCGCATAGAGTTGGACCCACATCTTGCAGCACTTATTGGAAGGCATAGCCGGAAGCCATGGGCGAAGTTCATTAATGTAGAAAATCAACACCTGGCTGTTCCCGAGGCTGTTGACTTTGTTGACAAGTTACTTCGGTACGATCACCAAGAACGACCGACTGCAAAAGAAGCAATGGCCCATCCTTATTTCAATCCAGTCAGAAATGCAGAAAGTAGCAGAACCCGTGCGCATTGA 1254 0.4482 MAIRPFQLTFSRNNPFLFLFPTSQSFSFPSSPFPNPFFLRHFASSAAPPSPPLPHDLRRRFRPPPPPHDTLAQKIGKATRRPGAPSKARVYSDVNVVRPKEYWDYENLTVQWGEQDDYEVVKKVGRGKYSEVFEGVHCTNNEKCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLHDIVRDQQSKTPSFIFEHVNNTDFKVLYPTLSDYDIRYYILELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIAKVLGTDELSAYLNKYRIELDPHLAALIGRHSRKPWAKFINVENQHLAVPEAVDFVDKLLRYDHQERPTAKEAMAHPYFNPVRNAESSRTRAH 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1309 417 SMART serkin_6 118 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal15g1309 417 Gene3D Transferase(Phosphotransferase) domain 1 195 403 - -
Lal15g1309 417 MobiDBLite consensus disorder prediction 397 417 - -
Lal15g1309 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Lal15g1309 417 ProSitePatterns Protein kinases ATP-binding region signature. 124 147 IPR017441 GO:0005524
Lal15g1309 417 CDD STKc_CK2_alpha 99 403 IPR045216 GO:0004674|GO:0006468
Lal15g1309 417 MobiDBLite consensus disorder prediction 49 71 - -
Lal15g1309 417 Pfam Protein kinase domain 118 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal15g1309 417 PANTHER CASEIN KINASE II SUBUNIT ALPHA 68 409 IPR045216 GO:0004674|GO:0006468
Lal15g1309 417 Gene3D Phosphorylase Kinase; domain 1 118 194 - -
Lal15g1309 417 PANTHER BNAA04G13490D PROTEIN 68 409 - -
Lal15g1309 417 ProSiteProfiles Protein kinase domain profile. 118 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal15g1309 417 SUPERFAMILY Protein kinase-like (PK-like) 89 407 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1309 Lal-Chr15 14982599 14988266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1309 116 403 Core Cell Cycle Gene Families AT3G48750 32.000 5.18e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Lal15g1309 Pkinase 3.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1309 K03097 - gmx:100776388 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g1309 15 14982599 14988266 Lal15g1309 15 14982599 14988266 ECH
Lal15g1309 15 14982599 14988266 Lal16g1327 16 9474103 9480985 LSH
Lal15g1309 15 14982599 14988266 Lal23g0131 23 1286877 1292720 LSH