Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1295 ATGTCTTGTTGCTTGAGGCTTATGAGTTATCTGCATCTTGCTACTGTGCACCCTTGTCCCTTTCGTGCACCTGTTGCGCAACCTCCTATCCTGCGCACCCCCACCCACCTTATCAACCACCGCCACCGTGTGCAGATCTTCGGTTCCAACCGCTCAACCATGTCGAAGGCGCGTGTCTACACCGATGTTAATGTTCTTCGTCCCAAAGAATATTGGGACTACGAATCTCTCACCGTTCAATGGGGTGATCAAGATGATTATGAGGTTGTACGAAAAGTGGGGCGAGGGAAGTATAGTGAGGTTTTTGAAGGCATAAATGTTAATAGCAATGAGCGCTGTGTAATCAAGATTCTCAAGCCTATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGTGGCCCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAACACTCTAAAACTCCTAGCTTAATATTTGAGCATGTCAACAGTACAGATTTCAAAGTTTTGTATCCAACCTTAACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAGGCCTTGGATTACTGTCACTCTCAAGGCATAATGCATAGAGATGTCAAGCCTCATAATGTTATGATAGATCATGAATTACGAAAACTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGGCAGGAATATAATGTTCGTGTGGCTTCAAGATACTTTAAAGGTCCTGAACTTCTAGTTGATTTGCAAGACTATGACTACTCACTAGATATGTGGAGCCTTGGCTGCATGTTTGCTGGAATGATATTTCGCAAGGAACCTTTCTTTTATGGTCACGACAACCATGATCAACTTGTCAAAATAGCAAAGGTGCTTGGGACTGATGAACTGAATGCATATCTGAACAAGTATCATTTGGAGCTTGATCCCCAACTTGATGCACAAGTAGGAAGGCATAGCCGCAAGCCCTGGTCTAAATTTATCAGTTCAGATAATCAGCATCTTGTTTCTCCAGAGGCCATTGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGACAGGCTAACAGCAAGAGAAGCTATGGCACATCCATACTTCTCACAGGTAAGGGCAGCAGAAAGTAGCAGAACGAGGACACAAACCTAG 1149 0.4247 MSCCLRLMSYLHLATVHPCPFRAPVAQPPILRTPTHLINHRHRVQIFGSNRSTMSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCVIKILKPIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEHVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDAQVGRHSRKPWSKFISSDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRTRTQT 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1295 382 PANTHER CASEIN KINASE II SUBUNIT ALPHA 19 381 IPR045216 GO:0004674|GO:0006468
Lal15g1295 382 SMART serkin_6 87 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal15g1295 382 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Lal15g1295 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Lal15g1295 382 ProSiteProfiles Protein kinase domain profile. 87 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal15g1295 382 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 19 381 - -
Lal15g1295 382 Pfam Protein kinase domain 87 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal15g1295 382 CDD STKc_CK2_alpha 68 367 IPR045216 GO:0004674|GO:0006468
Lal15g1295 382 Gene3D Transferase(Phosphotransferase) domain 1 154 380 - -
Lal15g1295 382 Gene3D Phosphorylase Kinase; domain 1 73 153 - -
Lal15g1295 382 SUPERFAMILY Protein kinase-like (PK-like) 80 371 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1295 Lal-Chr15 14759223 14766338 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1295 85 370 Core Cell Cycle Gene Families AT3G48750 31.457 1.29e-41 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Lal15g1295 Pkinase 2.8e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1295 K03097 - gmx:100820471 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g1295 15 14759223 14766338 Lal15g1295 15 14759223 14766338 ECH
Lal16g0244 16 1451094 1455330 Lal15g1295 15 14759223 14766338 LSH
Lal15g1295 15 14759223 14766338 Lal23g1302 23 13995192 13999581 LSH
Lal15g1295 15 14759223 14766338 Lal16g1332 16 9621159 9629181 LSH
Lal16g0244 16 1451094 1455330 Lal15g1295 15 14759223 14766338 PCT
Lal15g1295 15 14759223 14766338 Lal15g1295 15 14759223 14766338 PCT
Lal15g1295 15 14759223 14766338 Lal16g1332 16 9621159 9629181 PCT
Lal23g1302 23 13995192 13999581 Lal15g1295 15 14759223 14766338 PCT
Lal15g1295 15 14759223 14766338 Lal16g0244 16 1451094 1455330 PCT
Lal15g1295 15 14759223 14766338 Lal23g1302 23 13995192 13999581 PCT
Lal16g1332 16 9621159 9629181 Lal15g1295 15 14759223 14766338 PCT