Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1280 ATGGTGGGAATGAGGAAAGATCCTAAAGTTGGCGGCGGTGTCGGTGGAACTTGTGAAGGCGACAGAATTCAAGTCTCTGTCCGAAAGGATCAGTTTAACGAATGGAGAGAACATTTGGTTGAGAGTTCAACTCATGTCATGCACAATTTTAATGTCATGCACAATGACATCCAATTTAAGGCATGTGACCATGTTTACAGAATGCAATTCACTGCCGGTACCACTCTCAAACAAAGAGAATTTCCTGATATTCCTGAATGGGAATATGATTTCAAAAAGTTTGGTGACATCCTTGACGGAAACGATATCATTGGTGCTTTTGATAAGGTAATATTCTCCCAAACACAAGGCAATTTGAAGAAAGTTGTCTTCAGTTTGAAAGATTTTAGTGGTGATTTCATTAACTGTACTCTGTGGGAATCACATGCTACCAAATTCGAGAAACACTATAACAACCACTGTAATGTTGAACCTATGATAATTTTGTTAACTCATGCTAGAATCAAAGAAGGACAAGGTAAGTATCCACATAGCATTTCCAACTCATGGTGCGGATCAAAAATATTGATTGGTGAAGAAATTCCCAACATTGACAAGTACAAACAAAGTCTATCATGTGATACATTGAGCCATAGTAACAGCCAAATGTCACAATATTCTAACTTATCTGATGATGAGCGATTTATGTATAAAGCTGAAGTCAAGAGTATTACAGAAATTTCTGCAATTACATCTTCTGAGGAAATAACATGTGTAACAGTTGGGACGACAACAATGTTTGTTGTTGGCAAACACGGATGGTACTATGAAGGTTGTACTAAATGTACAAAGAAGACTGATGTTAAAGATGGCCCATTCACGTGCAAGTATAAACTGGATATTAAAGTCATACACCAACATGGGAGTGGAAGGTTTGTTTTCTGGGATTGTCAATGTGCTGACATCATTGGCGTATCGGCATCTGACTTAAGAGATCAGATGGTTGCAGAAGGTGAAGATGATCCCAAGGCATTCCCTTTAATTCTGGATGAACTGCTTGCAAGAACAATGGCTCTAAGGGTCAAAGTGCAACCCTCATACAACCAATCTTCTGTTATCAGACTTTCTGAGGATCCAAATTTAATCAAGAATATACTTGATCAAATTGTCATATTTCAGTCTGTGTCTATTACTGCTGATCATGATCCAGACCTTTTACAAGTTTTAACTCCAGCCAAACGATTATCGGCTGACATTGACGTGGACCTCATACAAAGTCCACTGTATAATTCTACTCAGTTGTCATCTTCAAAGGTGGCAAAGCATATCAACATTGACTGA 1320 0.3826 MVGMRKDPKVGGGVGGTCEGDRIQVSVRKDQFNEWREHLVESSTHVMHNFNVMHNDIQFKACDHVYRMQFTAGTTLKQREFPDIPEWEYDFKKFGDILDGNDIIGAFDKVIFSQTQGNLKKVVFSLKDFSGDFINCTLWESHATKFEKHYNNHCNVEPMIILLTHARIKEGQGKYPHSISNSWCGSKILIGEEIPNIDKYKQSLSCDTLSHSNSQMSQYSNLSDDERFMYKAEVKSITEISAITSSEEITCVTVGTTTMFVVGKHGWYYEGCTKCTKKTDVKDGPFTCKYKLDIKVIHQHGSGRFVFWDCQCADIIGVSASDLRDQMVAEGEDDPKAFPLILDELLARTMALRVKVQPSYNQSSVIRLSEDPNLIKNILDQIVIFQSVSITADHDPDLLQVLTPAKRLSADIDVDLIQSPLYNSTQLSSSKVAKHINID 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1280 439 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 31 310 - -
Lal15g1280 439 PANTHER REPLICATION FACTOR A 1, RFA1 31 310 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lal15g1280 439 Gene3D - 18 78 IPR012340 -
Lal15g1280 439 CDD RPA1_DBD_B_like 120 204 - -
Lal15g1280 439 Gene3D - 220 382 IPR012340 -
Lal15g1280 439 SUPERFAMILY Nucleic acid-binding proteins 235 361 IPR012340 -
Lal15g1280 439 Gene3D - 82 212 IPR012340 -
Lal15g1280 439 Pfam Domain of unknown function DUF223 19 99 IPR003871 -
Lal15g1280 439 SUPERFAMILY Nucleic acid-binding proteins 89 210 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1280 Lal-Chr15 14488590 14496083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1280 18 323 Core DNA Replication Machinery Family AT5G45400 21.893 2.02e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1280 - - lang:109343677 578.941