Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1247 ATGTGGGATCTCAATGACTCACTCGGTCAGAGAAGAAAGTGTGAGGAGGAATCAGAAGAAGGGTGTTCTTCTTTAAAGACTTCAATGGATTGTGATGATGATGATGATAATAATAACAATAAAGGAAAAAGAGTTGGATCTGTATCCAATTCAAGTTCTTCTGCTGTGGTTATAGAAAACGGATCAGAAGAAGAACAAGAAGAAGGTGAAAAGATGATGATGATGAAGAAGAGAAGCAGCAAGATATTTGGGTTCTCTGTGACCCATGAAAGTGATGATTCCATGGATAGTGATAATAATAATAATAATCTCTCACAACCTCTTATAACAACTCGGCAGTTTTTTCCGGTGGAGGAAGCTGATATCGCCGCCGCATCAGACGGTGGTTGCGGTGGAATATCTTCTTTCCCTCGTGCTCATTGGGTTGGTGTTAAGTTCTGTCAATCAGAAAAAGTTGGTGCTGGAAAATCAGTTGAAGTTTCACAACCAATGAAAAAGAGTCGCAGAGGACCAAGGTCAAGGAGTTCACAGTATAGAGGTGTCACCTTTTACAGAAGAACAGGTCGATGGGAATCTCACATATGGGATTGTGGAAAACAAGTGTATCTAGGTGGATTTGACACAGCACATGCAGCTGCACGTGCATATGATAGAGCTGCTATTAAGTTCCGAGGAGTAGACGCCGATATCAACTTCAACATCGAAGACTATGAAGATGACTTGAAGCAAATGAACAATTTGACGAAGGAAGAGTTTGTTCACGTTCTTCGTCGACAAAGCACTGGATTTCCGAGAGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAATGTGGAAGATGGGAAGCTAGAATGGGTCAATTTTTAGGGAAAAAGTACGTTTATCTGGGTTTGTTCGACACCGAGGTTGAAGCAGCAAGGGCCTATGATAAAGCAGCAATAAAATGCAATGGCAAAGAAGCTGTCACAAATTTTGATCCAAGCATCTATGACAATGATCTTAATTCTGGTACTACTACCACTATAGATCACAATCTAGACTTAAGTTTGGGAAATTTCAGCTCCAAGACTAGTAATCACATTCCTAATACTTCAAGTACTCATGATCAACACATGTTATCTGAGTCTAATTGGAGAAATGGGGGTAACATTAACAAGCCAAAGCTGGTGAGTATATTACCAAAACCATATTGCAATAGAAGCAACATTGAAACACATGGTGGAATGGGTATGCAAGGACTTCATTCTTCACCTTCAAATGAATTACAAAGATATGGTCCCTACAAGTTTCTTGGAGAATCTCAAATGCTTCACAATTTTGCACATCTTCAACCACCAAATTTTCATTTTCCAAGCAGCAGCAATGGAGGCCTTATTGGGAGTGATCTTTCATTATCAGTGAGTGATCAACAACAACAACAGTGGCAATCTAGGTCTCCTCATTATATAGCAACTGCTGCAGCATCATCAGGATTCCCACCACAGATTATAAGACCCTCTTCTCAAAGTTGGCTGCAGAAAAATGGGTTCCACACTCTAATGAGACCCTCCTCATGA 1557 0.4033 MWDLNDSLGQRRKCEEESEEGCSSLKTSMDCDDDDDNNNNKGKRVGSVSNSSSSAVVIENGSEEEQEEGEKMMMMKKRSSKIFGFSVTHESDDSMDSDNNNNNLSQPLITTRQFFPVEEADIAAASDGGCGGISSFPRAHWVGVKFCQSEKVGAGKSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNIEDYEDDLKQMNNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKEAVTNFDPSIYDNDLNSGTTTTIDHNLDLSLGNFSSKTSNHIPNTSSTHDQHMLSESNWRNGGNINKPKLVSILPKPYCNRSNIETHGGMGMQGLHSSPSNELQRYGPYKFLGESQMLHNFAHLQPPNFHFPSSSNGGLIGSDLSLSVSDQQQQQWQSRSPHYIATAAASSGFPPQIIRPSSQSWLQKNGFHTLMRPSS 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1247 518 PRINTS Ethylene responsive element binding protein signature 270 281 IPR001471 GO:0003700|GO:0006355
Lal15g1247 518 PRINTS Ethylene responsive element binding protein signature 308 328 IPR001471 GO:0003700|GO:0006355
Lal15g1247 518 Pfam AP2 domain 177 225 IPR001471 GO:0003700|GO:0006355
Lal15g1247 518 Pfam AP2 domain 268 317 IPR001471 GO:0003700|GO:0006355
Lal15g1247 518 SUPERFAMILY DNA-binding domain 176 234 IPR016177 GO:0003677
Lal15g1247 518 MobiDBLite consensus disorder prediction 42 60 - -
Lal15g1247 518 MobiDBLite consensus disorder prediction 1 75 - -
Lal15g1247 518 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 515 - -
Lal15g1247 518 Gene3D AP2/ERF domain 176 235 IPR036955 GO:0003700|GO:0006355
Lal15g1247 518 Gene3D AP2/ERF domain 268 327 IPR036955 GO:0003700|GO:0006355
Lal15g1247 518 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 515 - -
Lal15g1247 518 CDD AP2 268 328 IPR001471 GO:0003700|GO:0006355
Lal15g1247 518 MobiDBLite consensus disorder prediction 157 177 - -
Lal15g1247 518 ProSiteProfiles AP2/ERF domain profile. 177 233 IPR001471 GO:0003700|GO:0006355
Lal15g1247 518 MobiDBLite consensus disorder prediction 1 41 - -
Lal15g1247 518 SUPERFAMILY DNA-binding domain 268 328 IPR016177 GO:0003677
Lal15g1247 518 ProSiteProfiles AP2/ERF domain profile. 269 326 IPR001471 GO:0003700|GO:0006355
Lal15g1247 518 SMART rav1_2 269 332 IPR001471 GO:0003700|GO:0006355
Lal15g1247 518 SMART rav1_2 177 239 IPR001471 GO:0003700|GO:0006355
Lal15g1247 518 CDD AP2 177 234 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1247 Lal-Chr15 13984755 13990074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1247 1 517 AP2-EREBP Transcription Factor Family AT4G36920 54.174 1.39e-136 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lal15g1247 AP2 8.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1247 K09284 - gmx:100792442 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g1247 15 13984755 13990074 Lal15g1247 15 13984755 13990074 ECH
Lal16g0226 16 1353067 1357016 Lal15g1247 15 13984755 13990074 LSH
Lal15g1247 15 13984755 13990074 Lal23g1323 23 14095655 14102235 LSH
Lal15g1247 15 13984755 13990074 Lal16g1374 16 10191039 10195034 LSH
Lal16g0226 16 1353067 1357016 Lal15g1247 15 13984755 13990074 PCT
Lal15g1247 15 13984755 13990074 Lal15g1247 15 13984755 13990074 PCT
Lal15g1247 15 13984755 13990074 Lal16g1374 16 10191039 10195034 PCT
Lal23g1323 23 14095655 14102235 Lal15g1247 15 13984755 13990074 PCT
Lal15g1247 15 13984755 13990074 Lal16g0226 16 1353067 1357016 PCT
Lal15g1247 15 13984755 13990074 Lal23g1323 23 14095655 14102235 PCT
Lal16g1374 16 10191039 10195034 Lal15g1247 15 13984755 13990074 PCT