Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1183 ATGGATTGGGTTCGAGGAGAATCAATTGGTAGAGGAAGCTTCGCTAAGGTAAATTTAGCAATACCCAGAAACAGTTCAATTCAGTTTTCATCTCCGACCGCTGTGAAATCCTCCGAGGTTTCAACATCTTCATCACTCAAGAGCGAGAAAAGAATCCTCGACAACATAGGTTCTTGTCCAAGAATCATTCGTTGTTTCGGAGATGATTACACCTTTGAGAATGGTTCCGAGTACTACAACTTGTTCCTCGAATATGCCTCCGGCGGAAGCCTCTCCGATCAGCTCAAACTTCACGGTGGAAGGTTCAAAGAAACCTCTGTTCGCGGTTACGCAAAGTCTATAATCGAGGGTCTAATGCATATTCATGAAAAAGGGTTTGTTCATTGCGACATAAAGCTACAAAACATCCTCGTATTCAGTGAAGGAGAAATTAAGATTGCTGATTTTGGTCTAGCGAAGAAAACAAGGGAGAATGAAAAGAAAACAGGGTTTGAATGCAGGGGAACTCCTCTATTTATGTCACCGGAATCTGTGAATGACGGTGAGTATGAGTCACCGGCGGATATATGGGCTTTCGGTTGCGCGGTGGTGGAGATGGTGGCCGGAAAACCAGCATGGAATGTTAATAATGATCAAAGCGTGTTTTCTTTATTCGTTCGCATTGCATTAGGGGAAGAATTGCCTGAGATTCCTGAAGAGTTGTCACAAGAGGGTAAAGATTTTCTTGCTAAGTGTTTTATTAAGGATCCTACAAAAAGATGGACGGCTGAGATGCTTTTGAAGCACCCTTTTCTTTCTGATGGTACTGTTACATTGGAATGTGCTAATGAGAAAAAACCATCACCAAGAAGCCAATTTGATTTCCCTGATTGGGTTTCTAGCACTACTGCTTCTGTTCCATCTTCGCCGGAATTCGGCGAATTTGATTCAACTTCTTTGTTTAATTTCTTTTCTCCGGCCGATCGGCTCCGCGAAATCGCCACTAATAATGGACCCCTGGATTGGTCTGAATCAGATGGTTGGACATGTGTTAGGTGA 1038 0.4306 MDWVRGESIGRGSFAKVNLAIPRNSSIQFSSPTAVKSSEVSTSSSLKSEKRILDNIGSCPRIIRCFGDDYTFENGSEYYNLFLEYASGGSLSDQLKLHGGRFKETSVRGYAKSIIEGLMHIHEKGFVHCDIKLQNILVFSEGEIKIADFGLAKKTRENEKKTGFECRGTPLFMSPESVNDGEYESPADIWAFGCAVVEMVAGKPAWNVNNDQSVFSLFVRIALGEELPEIPEELSQEGKDFLAKCFIKDPTKRWTAEMLLKHPFLSDGTVTLECANEKKPSPRSQFDFPDWVSSTTASVPSSPEFGEFDSTSLFNFFSPADRLREIATNNGPLDWSESDGWTCVR 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1183 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Lal15g1183 345 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 301 - -
Lal15g1183 345 SMART serkin_6 3 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal15g1183 345 ProSiteProfiles Protein kinase domain profile. 3 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal15g1183 345 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Lal15g1183 345 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 301 - -
Lal15g1183 345 Gene3D Transferase(Phosphotransferase) domain 1 93 293 - -
Lal15g1183 345 Pfam Protein kinase domain 5 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal15g1183 345 CDD STKc_MAPKKK 2 265 - -
Lal15g1183 345 Gene3D Phosphorylase Kinase; domain 1 1 92 - -
Lal15g1183 345 SUPERFAMILY Protein kinase-like (PK-like) 3 304 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1183 Lal-Chr15 12249675 12250712 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1183 1 345 MAP Kinase Kinase Kinase AT4G36950 51.149 2.69e-116 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lal15g1183 Pkinase 7.3e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1183 - - aprc:113858661 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g1183 15 12249675 12250712 Lal15g1183 15 12249675 12250712 ECH
Lal15g1183 15 12249675 12250712 Lal16g1389 16 10461631 10462674 LSH
Lal15g1183 15 12249675 12250712 Lal15g1183 15 12249675 12250712 PCT
Lal15g1183 15 12249675 12250712 Lal16g1389 16 10461631 10462674 PCT
Lal16g1389 16 10461631 10462674 Lal15g1183 15 12249675 12250712 PCT