Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1178 ATGGAGCAGCGGAAGCTTGTGGTTTTGGGTATCCCGTGGGATATCGACACTGAGGGCTTGAAAGAATATATGAGCAAATTTGGAGATCTGGAAGATTGTATTGTTATGAGGGAAAGATCAACTGGCCGGTCTCGTGGTTTTGGATATGTTACATTTACATCAGTGGATGATGCTAAGAATGTATTATCCGGTGAACATATTCTTGGTAATCGGACGCTGGAAGTGAAAGTGGCCACACCAAAGGAGGAGATGAGGGCACCACCAGCCAAAAAAGTTACTAGAATCTTTGTGGCTAGAATTCCAGTATCAGTAACAGAAGAAACGTTTAGAAGTCATTTTGAGAAATATGGTGAGATAACAGATTTATACATGCCGAAGGATCAAGGATCAAAAGCGCATCGTGGAATTGGTTTTATCACTTTTGCAAATGCAGATTCTGTAGAGAATTTGATGACAGAAACCCATGAACTAGGTGGTTCTACTGTGGTGGTTGATCGAGCAACACCAAAGGAAGATGATTTTAAGCCAGTTGACAGAATGTCACACCCACGTTCACACTCCCACTCATATTTGCGTTCACACTCCCGTTCACACCCATACTCACAGTCACAGGGAGGATATGGTGCTTACGATGCATATATTTCTGCAACAACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGGCGGAGCTATGGAAGGGGTGAACCTGTTCGTGGAATGGGCAATAAGATTTTTGTTGGGCGTCTTCCCCAAGAGGCAACCAGTGATGATCTTCGTCAGTATTTTGGAAGATTTGGCCGTATATTAGATGCGTATATTCCCAGGGATCCTAAGAGATCTGGTCATAGAGGTTTTGGTTTTGTTACTTTTGCTGATGACGGTGTGGCAGAACGTGTCTCTCGAAGGTCTCATGAGATCTGTGGACATCAGGTGGCAATTGATTCGGCCACACCTCTTGATGATGCTGAACCTGGGCCCGGGCCCGGGCCTACCGGTGGGAATTTTATGTTGAATAGCATGGATTCTTTTGGGGGATTTGGTGGTCCTATGCGAACTTATGGGAGGATGTATGGTAGCCTAGACTTCGATGATTGGAGTTATGGAATGTCCAATGCGAGACCATCAAGATCAGATTGGAGGTATAGGCCATACTAG 1170 0.4487 MEQRKLVVLGIPWDIDTEGLKEYMSKFGDLEDCIVMRERSTGRSRGFGYVTFTSVDDAKNVLSGEHILGNRTLEVKVATPKEEMRAPPAKKVTRIFVARIPVSVTEETFRSHFEKYGEITDLYMPKDQGSKAHRGIGFITFANADSVENLMTETHELGGSTVVVDRATPKEDDFKPVDRMSHPRSHSHSYLRSHSRSHPYSQSQGGYGAYDAYISATTRYAALGAPTLYDHPGRSYGRGEPVRGMGNKIFVGRLPQEATSDDLRQYFGRFGRILDAYIPRDPKRSGHRGFGFVTFADDGVAERVSRRSHEICGHQVAIDSATPLDDAEPGPGPGPTGGNFMLNSMDSFGGFGGPMRTYGRMYGSLDFDDWSYGMSNARPSRSDWRYRPY 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1178 389 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 169 IPR000504 GO:0003723
Lal15g1178 389 PANTHER OS01G0945800 PROTEIN 3 389 - -
Lal15g1178 389 CDD RRM2_TDP43 247 322 - -
Lal15g1178 389 MobiDBLite consensus disorder prediction 167 185 - -
Lal15g1178 389 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Lal15g1178 389 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 247 323 IPR000504 GO:0003723
Lal15g1178 389 SUPERFAMILY RNA-binding domain, RBD 3 86 IPR035979 GO:0003676
Lal15g1178 389 SUPERFAMILY RNA-binding domain, RBD 247 344 IPR035979 GO:0003676
Lal15g1178 389 MobiDBLite consensus disorder prediction 317 339 - -
Lal15g1178 389 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 389 - -
Lal15g1178 389 SMART rrm1_1 248 319 IPR000504 GO:0003723
Lal15g1178 389 SMART rrm1_1 94 165 IPR000504 GO:0003723
Lal15g1178 389 SMART rrm1_1 5 76 IPR000504 GO:0003723
Lal15g1178 389 Gene3D - 245 327 IPR012677 -
Lal15g1178 389 SUPERFAMILY RNA-binding domain, RBD 89 188 IPR035979 GO:0003676
Lal15g1178 389 Gene3D - 1 87 IPR012677 -
Lal15g1178 389 Gene3D - 88 212 IPR012677 -
Lal15g1178 389 MobiDBLite consensus disorder prediction 167 204 - -
Lal15g1178 389 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 249 304 IPR000504 GO:0003723
Lal15g1178 389 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 73 IPR000504 GO:0003723
Lal15g1178 389 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 152 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1178 Lal-Chr15 12115190 12123522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1178 6 216 Eukaryotic Initiation Factors Gene Family AT3G16380 23.767 7.57e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1178 K14411 - jre:109009085 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g1178 15 12115190 12123522 Lal15g1178 15 12115190 12123522 ECH