Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1170 ATGGTTAAGAAGGAGGTGGTGGAATTTCAACAAAATTATCAACCTGTAACTGTGGCTTTTCATGGGGACAAGGAGATGCATCAGGATAACATATATTTTGAAGACATGTCTAAGAAATCTCCATTAACCATGGATAAACAAAACAAGGCAGTGGAAAATAAATACAAACTCTTGAACTCTCCCATAAAGCAAGCCACGTCTGGCGAAGCACAAAAGTTTGCAAGCTCCAATATGGTTGCAACAGATGGAACATCCTCTCGTGGTGAGGCCAAGTCATCTGCTGTAATTAAAGCAGAGGAGGTCCGATCAAGTTTGGAACAAGAATTCCCTAGTTTTGTGAAGTCGTTAGTCAGGTCGCATGTTGCTAGTTGTTTTTGGATGGGGTTGCCTGTAGCATTCTGTAAAAGCCACTTACCGGATAAGGACACAACGATCACTTTGGAAGATGAATCTGGTAAAGAATGCAAGACAAAATACATTGCATATAAGACAGGACTGAGTGCTGGTTGGAGACAGTTTTCTGCTGTGCACAAATTGCAGGAGGGTGATGTGGTTGTCTTCCAGTTAGTTGAACCTACAAGATTTAAGGTTTATATAATAAGAGCTAATAATTCAAGGGAACTAGACGGGGCCCTTTCACATCTGAATCTTGACGGTTGCACAAAACAAAAAGTTGGAGGCAAGACTTCAGACAAAGATAATGAAACTGATGCTGTTGCATATAATAGCCCAAAGAGAAAACATGGTAAGTTTGTCACACTAGATATCCAAAAGAAAAAGAGGACCAGTGTTCCAAGATTGGCACTTAAGGTTAGGCAATCTGCAGTACGATCCGAAAATGTTAGTGAGGAAGCTCTCTCAGAAGTACTGGAAGGCTTTAAAATGCTTGAATTCAAAGATGTGAAAGGGTTTGAAGACTTCAGCATCACAATTGATGGAATGTCAATAGATGCTGAACTCCCCAATGAAATACGAAACAAGTACTACAGGCTCTGCTGCAGTCAGAATGCCTTTCTTCATGAAAATCTCACCAGGGGTGTGAACCATAAATTGATTGCTGGAATTATATCTGAAACTGTCAACATTGCTGATGCCATAAAAGTTAGTGTGATAGCTACCCCGCGTGTAGAATTTGCTAATTGGGACAAGACTTTGCTTGCCTTTGAGCATTTGGGCATGAATGTTGAATTTTTAAGAGTTCGGTTACGCCGGATAGTAAGCATTGCCTATGAAACAGATGGTGCCTCAGAGACCAGAAGATACTTGAAGTATAGAACTGAACACAGTCAAGCAGATGATGAGATAAAGAACATAGAAACCAAACTTGAAGAATTGAAGGAAGCTTGTAATGGTTTTGGTGCTTATCTTGAGAGTTTGAAAAGCAAAGCTGAAAGCTATCAGGCCATGCTTCAGAAAGAGGTGGCTGCTCCTTGGTGA 1437 0.4064 MVKKEVVEFQQNYQPVTVAFHGDKEMHQDNIYFEDMSKKSPLTMDKQNKAVENKYKLLNSPIKQATSGEAQKFASSNMVATDGTSSRGEAKSSAVIKAEEVRSSLEQEFPSFVKSLVRSHVASCFWMGLPVAFCKSHLPDKDTTITLEDESGKECKTKYIAYKTGLSAGWRQFSAVHKLQEGDVVVFQLVEPTRFKVYIIRANNSRELDGALSHLNLDGCTKQKVGGKTSDKDNETDAVAYNSPKRKHGKFVTLDIQKKKRTSVPRLALKVRQSAVRSENVSEEALSEVLEGFKMLEFKDVKGFEDFSITIDGMSIDAELPNEIRNKYYRLCCSQNAFLHENLTRGVNHKLIAGIISETVNIADAIKVSVIATPRVEFANWDKTLLAFEHLGMNVEFLRVRLRRIVSIAYETDGASETRRYLKYRTEHSQADDEIKNIETKLEELKEACNGFGAYLESLKSKAESYQAMLQKEVAAPW 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1170 478 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100-LIKE 35 415 - -
Lal15g1170 478 SUPERFAMILY DNA-binding pseudobarrel domain 105 203 IPR015300 -
Lal15g1170 478 Gene3D - 89 205 IPR015300 -
Lal15g1170 478 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 35 415 IPR044837 -
Lal15g1170 478 Coils Coil 428 448 - -
Lal15g1170 478 Coils Coil 456 476 - -
Lal15g1170 478 Pfam B3 DNA binding domain 112 202 IPR003340 GO:0003677
Lal15g1170 478 SMART B3_2 112 203 IPR003340 GO:0003677
Lal15g1170 478 CDD B3_DNA 110 201 IPR003340 GO:0003677
Lal15g1170 478 ProSiteProfiles B3 DNA-binding domain profile. 112 203 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1170 Lal-Chr15 11856276 11860849 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1170 89 238 B3 DNA Binding Superfamily AT3G19184 43.333 5.32e-39 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal15g1170 B3 6.9e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1170 - - gmx:100819237 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g1170 15 11856276 11860849 Lal15g1170 15 11856276 11860849 ECH