Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1046 ATGGTGCACAGCGCCTACGATTCCTTCGAGCTTCTCACTGATTGCCCTTCCAAGATCGAATCTATCGAATCCTACGGTTCCAAAATCCTCCTCGGGTGCTTCGACGGATCTCTCCGTATCTACGCGCCGTCACATCCTCCGCCGTTATCGCAACCGGAGGAGCTGAGGAAGGAGCCATACGCGCTCGAGAGATGCGTGAGCGGCTTCGCGAAGAAGCCTCTGATTTCAATGCAGGTTGTGGAATCGAGGGAGCTGCTTCTGTCGTTATCTGAATCCATTGCGCTTCACAGACTCCCTAATTTCGAAGCAGTAGCGGTTATCACTAAGGCCAAAGGCGCCCATGTGTTCTGCTGGGACGAGGAGAGAGGGTTCTTGTGCTTCGCTAGGCAAAAGAGGGTTTGTATTTTCAGACATGATGGTGGTAGAGGATTTGTGGAGGTGAAAGACTTTGGTGTTCCTGATGTGGTGAAGTCGATGTGTTGGTGTGGTGATAATATATGCTTCGGGATTAGAAAGGAATATTTGATTTTAAATGCTGCAAATGGCACATTATCTGAGGTTTTTACTTCTGGAAGACTAGCACCGCCTTTAGTTGTCCCTGTTCCTTCCGGAGAACTTCTACTTGGGAAGGAGAACATTGGTGTATTTATGGCTCAAAATGGGAAACTTCGTCCAGATGGTAGGATTTGCTGGTCAGAGGCCCCATCAGAAGTTGTAATGCAAAAGCCATATGCTATAGCACTGCTGCCTAGATTTGTGGAGATTCGATCTCTCCGAGATCCGTATTCACTGATACAAACAGTAGTTCTTCGAAATGTACGCCATCTTCGCCAAAGCAATAATTCTGTGATTCTTGCTTTAGATAATTCTATTCACGGCCTTTTCCCAGTTCCTCTTGGAGCCCAGATTGTCCAATTAACAGCCTCGGGCAACTTTGAAGAAGCCTTGTCATTGTGCAAGCTTCTTCCACCTGAAGATTCAAGTCTTCGCGCTGCAAAGGAGAGTTCAATTCACATAAGATATGCGCACTATCTTTTTGACAATGGCAGCTATGAACAGGCAATGGAACATTTTCTGGCATCTCAAGTAGATATAACCTATGTGCTGTCTCTGTATCCATCAATTATCCTTCCAAAGACAACTATTGTTCATGACCCAGAGAAGTTGATGGACATTTATGGGGATGCTTTATATCTCTCCAGAGGTTCTTCGGGTGTGTCAGATGATTCGGAGTCCTCTCCAAGATCTCATATGTCAGAACCTGATGAGAATGCAGCACTCGAGTCCAAAAAAATGAGCTATAATATGCTTATGGCTCTCATAAAGTTTTTGCAGAAGAAGAGATACAGTGTTACTGAGAAGGCCACTGCAGAGGTTACCGAAGAAGTTGTTTTAGATGCAGTGGAGGATAACATCTCATCCTACAATAGTAGTAGGTTTAAGAAAATAAACAAGGGAGGTGGTAGTGTACCTATTAGTTCAAGAGCTCGGGAGATGGCTTCAATATTGGATACTGCTCTACTCCAAGCATTCCTGCTTACTGGCCAAACTTCTGCGACTGAAGAATTACTGAAAGGTCTTAACTACTGTGATCTGAAGGTATGTGAAGAAATACTTCAGGAAGGCAGCTATCATGTTGCTTTATTAGAACTTTACAGTTGCCACTCAATGCACCGGGAAGCTCTAGAACTTGTTCACAAATTGGTGGAAGAGTCAAAGTCTGGCCAATCTGAGATTACACATAGGTTCAAGCCTGAGACCATCATTGAATATCTCAAGCCACTGTGTGCAACAGACCCCTTAGTTGTTTTAGAGTTCTCAATGCTTGTTCTTGAATGCTGCCCAACCCAAACTATTGAGCTCTTTCTGTCTGGAAATATTCCAGCAGATATGGTGAACTCATATTTAAAGCAAAATGCTCCAAACATGCAAGCCACGTACTTGGAGCTCATGCTTGCGATGAATGAGGATGCCATATCCGGAAATCTACAAAATGAAATGGTAGACATCTATCTTTCCGAAGTACTTGATTGGCAAGCGGATTTAACTGCTCAAGGGAAATGGGACGAAAAAGCTTATTCCCCAAAGAGGAAAAAATTATTGTCTGCTTTGGATAATATATCAGGATACAATCCAGAGGCTCTTCTGAAACGTCTTCCACTAGATGCTTTATATGAAGAGCGTGCAATATTGTTGGGAAAAATGAACCAACACGAACTAGCATTATCTTTGTATGTTCATAAGCTTCATGTTCCAGAGCTGGCATTATCTTATTGTGACCGGGTGTATGAGTATATGCTCAAACCTTCTGGAAAATCTCCAAGTAACATATACCTATTGCTTCTGCAAATCTATATGAATCCACAAAGGACAACCAAGAGCTTAGAAAAGAGAATTACAAATCTATTAACCCCCCAGAAATCAACAATTTCAAGGGTTATCAGTTCAAAAAAATTACTAAAAACCAGAAGCCGAGGGTCTAAGAAAATCGCTGCAATAGAGTTTGCAGAGGATACAAAAGCTAGTTTGAGCAGCACTGACAGTGGCAAGAGTGATGCTGATGAATTTAATGAGGAAGGAGGTACTTCTATCATGCATGATGAGGTCCTAGATTTGTTGAGTCGTAGATGGGATAGAATCAATGGAGCCCAGGCACTTAAACTTTTACCTAGAGAGACTAAACTGCAGAACCTGATTCCATTTCTTGGACCCCTGCTGAGAAAATCTAGTGAAATGTATCGTAATTGCTCAGTGGTCAAGAGCTTGAGACAGAGTGAGAACCTTCAGGTGAAAGATGAACTCTACAGTAAGAGAAAAACAGTTGTGAAGATGACCGGTGATAACATGTGTTCTCTGTGCAATAAGAAAATAGGGGCTAGTGTTTTTGCAATCTATCCGAATGGGAAAACTCTAGTGCACTTCAATTGTTTCAGGGATTCTCAAAGTATGAAAGCTGTAGCCAAAGGGTCTCCATTGAGGAAGCCATTTTGA 2991 0.4269 MVHSAYDSFELLTDCPSKIESIESYGSKILLGCFDGSLRIYAPSHPPPLSQPEELRKEPYALERCVSGFAKKPLISMQVVESRELLLSLSESIALHRLPNFEAVAVITKAKGAHVFCWDEERGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDVVKSMCWCGDNICFGIRKEYLILNAANGTLSEVFTSGRLAPPLVVPVPSGELLLGKENIGVFMAQNGKLRPDGRICWSEAPSEVVMQKPYAIALLPRFVEIRSLRDPYSLIQTVVLRNVRHLRQSNNSVILALDNSIHGLFPVPLGAQIVQLTASGNFEEALSLCKLLPPEDSSLRAAKESSIHIRYAHYLFDNGSYEQAMEHFLASQVDITYVLSLYPSIILPKTTIVHDPEKLMDIYGDALYLSRGSSGVSDDSESSPRSHMSEPDENAALESKKMSYNMLMALIKFLQKKRYSVTEKATAEVTEEVVLDAVEDNISSYNSSRFKKINKGGGSVPISSRAREMASILDTALLQAFLLTGQTSATEELLKGLNYCDLKVCEEILQEGSYHVALLELYSCHSMHREALELVHKLVEESKSGQSEITHRFKPETIIEYLKPLCATDPLVVLEFSMLVLECCPTQTIELFLSGNIPADMVNSYLKQNAPNMQATYLELMLAMNEDAISGNLQNEMVDIYLSEVLDWQADLTAQGKWDEKAYSPKRKKLLSALDNISGYNPEALLKRLPLDALYEERAILLGKMNQHELALSLYVHKLHVPELALSYCDRVYEYMLKPSGKSPSNIYLLLLQIYMNPQRTTKSLEKRITNLLTPQKSTISRVISSKKLLKTRSRGSKKIAAIEFAEDTKASLSSTDSGKSDADEFNEEGGTSIMHDEVLDLLSRRWDRINGAQALKLLPRETKLQNLIPFLGPLLRKSSEMYRNCSVVKSLRQSENLQVKDELYSKRKTVVKMTGDNMCSLCNKKIGASVFAIYPNGKTLVHFNCFRDSQSMKAVAKGSPLRKPF 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1046 996 PANTHER CNH DOMAIN CONTAINING 1 994 IPR032914 GO:0016192
Lal15g1046 996 Pfam Vacuolar sorting protein 39 domain 2 870 978 IPR019453 -
Lal15g1046 996 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 606 793 IPR000547 GO:0006886|GO:0016192
Lal15g1046 996 Pfam CNH domain 65 276 IPR001180 -
Lal15g1046 996 ProSiteProfiles Citron homology (CNH) domain profile. 16 283 IPR001180 -
Lal15g1046 996 Pfam Vacuolar sorting protein 39 domain 1 503 611 IPR019452 -
Lal15g1046 996 PANTHER VACUOLAR SORTING PROTEIN 39 1 994 - -
Lal15g1046 996 SUPERFAMILY WD40 repeat-like 25 183 IPR036322 GO:0005515
Lal15g1046 996 MobiDBLite consensus disorder prediction 404 424 - -
Lal15g1046 996 Pfam Region in Clathrin and VPS 631 761 IPR000547 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1046 Lal-Chr15 8644398 8662842 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1046 K20183 - gmx:100805342 1524.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1125 16 7617680 7628929 Lal15g1046 15 8644398 8662842 LSH
Lal15g1046 15 8644398 8662842 Lal23g0539 23 8200414 8206994 LSH