Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1004 ATGGAATGCCATAGAATTTGGGCATCTTTATGTGAACCAAAACCTCCAAATTTAGTAAGGAACAAGACCTCAGTCTATATAAAGGATTGTTCTAGACCTAGGAGCCCAATATTTGCCTTGGATGTTGCTCCAGAAGTCGCCATGTTGTCTGCTTCGAGATACTTCCTTAGCGTGAAATCTTTGTGGATATCTCCTCCTTTTTCTTTCATGGTGTTGTCCTTGGCAGATGTTCATCTAGAAGAACTGCCAAAACTGATTCATATTTGTGTTGTTCTGCCTGTTTCTGGTGTGAAAAATCTTTCTTCCAGTGTGCAGAGTACTCCAGAAAAAAGTGCCCATTCAGATGATCCTTCAAGAAGGATGACTGACTCCAAGTCAACTGGTAAGGTAATTAAGAAACAAGACTCCAAAAACAATTCCACTCTCAGCCATCAGCCTCCTAGGAAGCAAAACCGCAAGGGTGAAAACCCCATGCGCTCGTTATCTACTCCTGATCAGTCTTCTGATTTTGGACATTCAAATTCTTGGATCTGTAAAAATGCTGCTTGTAGGGCAGTTCTATCTATAGATGATACATTTTGCAGAAGGTGCTCTTGCTGTATTTGTCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTATGCACATCTGAATCTACTCAAGGAGACTCCTGTGGGTTGTCTTGCCATATTGAGTGTGCCCTCGAACGTGAAAAAGTTGGAGTTATTGATCATGGGCAACTGATTCAGCTAGATGGTGGTTATTGTTGTGCATCTTGTGGTAAAGTTACAGGGATACTTGGATGCTGGAAAAAGCAACTAAGTATAGCAAAAGAGGCCCGGCGTGTAGATGTACTCAGTTATAGGATATATTTGAGCTACAGGCTGCTGGACAGGACATCAAAATTTAAAGAATTGCATCAAATTATACAAGAGGCTAAGGCTAAACTGGAGACAGAAGTTGGTCCAGTTAATGGTGTTTTTGTGAAGATGGCACGGGGTATTGTCAGTAGACTCTCTATTGCCAGTGATGTGCAGAAACTATGCTCTCTTGCTATTGAGAAAGCTGATAACTGGCTGACTACTGTTCACAATGTAAATACAGATTCCAGAGAGGGTTCACTTCCTGCTGCTTGCAAGTTTGTTTTTGAAGAGGTTACAGCTTCCTCAGTAAAAATCATCTTAATTGAAATATCACATGTATCTTCTGAGGACATTAAGGGATACAAGCTCTGGTATTACAAGAGTGGGGAGGAATTGCACACAAAGGAGCCTGTTTCTGTGTTCCTCAAATCTCAAAGGAGGATTTTGATATCAAACCTTCAGCCGTGCACTGAATATATTTTTCGGATTATATCTTATACTGATTTGGGTGACCTGGGCCATTCTGAGGCTAAGTGTTTCACCAAGAGCATCGAGATAATTCAAAAGAACCCCTCTTCCTCTATTGTGATGAATCAAAAAAAAGATAACCTTCAAACTAGAGGTAGTTCTTCTGGCCCCAAAGTAGAGCTCCATCCGACAATGGAAGACTCTGGATTTAAGGTTCGAGACCTTGGGAAAATTTTGCGTCTTGCTTGGGCTAAAGAACAAGGTTGCTTTGAGGAGTTTTGTTGTGCTAATAAGAAAATTTGCAGTGGACAAAATGAGATGGTCAAGCCAAAATTTCCAGAAGAGAAGTTGCCTTCAGTTTCACGAGACCTTGATTTAAATGTTGCTTCAGTTCCTGATTTAAATGAAGAGCTAACACCTCCTTTTGAGTCATCCAAAGATGAAGATAATGGTTGCTCTTCCCTGCAGGCAGTTGAGGAAGATGATGATGATGCTTCTCGTGATATAGAGAAAAATGGTTTAGCTAGATCACATTGGAGTGGTGACTCTCAAACCTGGACACGTGGTCCTGCCGGAGAAGTGGCAACTGTTGACTCTCGTGTAGATATATGTAGGAAAAGGCTAGCGAGCAGAAATGAAGAGACGCATGATTGTGACAGCACTTTGATAAATGGCTCTCCCTTATGCAGATCTGATGGATCAATCTCTTTGGATGAGAACTTCGAATATTGTGTGAAAGTTATTCGCTGGCTAGAATGTGATGGTCACATCAGACATGAATTTAGGTTGAAATTGCTAACATGGTTTAGTTTGAGGTCGACGGAGCAAGAGCGCAGGGTAGTTAATACCTTTATTCAAACTCTTATTGATGATCCAAGTAGTTTGGCAGGGCAACTGGTTGACTCTTTCTCTGATGTTATTTCCAACAAAAGGCCAAGAAATGTATTCTGCAATAAGGCTGTGGCATCGAATTAA 2313 0.4107 MECHRIWASLCEPKPPNLVRNKTSVYIKDCSRPRSPIFALDVAPEVAMLSASRYFLSVKSLWISPPFSFMVLSLADVHLEELPKLIHICVVLPVSGVKNLSSSVQSTPEKSAHSDDPSRRMTDSKSTGKVIKKQDSKNNSTLSHQPPRKQNRKGENPMRSLSTPDQSSDFGHSNSWICKNAACRAVLSIDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESTQGDSCGLSCHIECALEREKVGVIDHGQLIQLDGGYCCASCGKVTGILGCWKKQLSIAKEARRVDVLSYRIYLSYRLLDRTSKFKELHQIIQEAKAKLETEVGPVNGVFVKMARGIVSRLSIASDVQKLCSLAIEKADNWLTTVHNVNTDSREGSLPAACKFVFEEVTASSVKIILIEISHVSSEDIKGYKLWYYKSGEELHTKEPVSVFLKSQRRILISNLQPCTEYIFRIISYTDLGDLGHSEAKCFTKSIEIIQKNPSSSIVMNQKKDNLQTRGSSSGPKVELHPTMEDSGFKVRDLGKILRLAWAKEQGCFEEFCCANKKICSGQNEMVKPKFPEEKLPSVSRDLDLNVASVPDLNEELTPPFESSKDEDNGCSSLQAVEEDDDDASRDIEKNGLARSHWSGDSQTWTRGPAGEVATVDSRVDICRKRLASRNEETHDCDSTLINGSPLCRSDGSISLDENFEYCVKVIRWLECDGHIRHEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDVISNKRPRNVFCNKAVASN 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1004 770 MobiDBLite consensus disorder prediction 133 147 - -
Lal15g1004 770 CDD FN3 382 461 IPR003961 GO:0005515
Lal15g1004 770 ProSiteProfiles Fibronectin type-III domain profile. 377 476 IPR003961 GO:0005515
Lal15g1004 770 Gene3D Immunoglobulins 376 496 IPR013783 -
Lal15g1004 770 PANTHER VIN3-LIKE PROTEIN 2-RELATED 119 766 IPR044514 GO:0010048|GO:0040029
Lal15g1004 770 SUPERFAMILY Fibronectin type III 384 466 IPR036116 GO:0005515
Lal15g1004 770 MobiDBLite consensus disorder prediction 156 170 - -
Lal15g1004 770 CDD PHD_VIN3_plant 198 262 - -
Lal15g1004 770 MobiDBLite consensus disorder prediction 577 598 - -
Lal15g1004 770 Pfam PHD - plant homeodomain finger protein 178 296 IPR032881 -
Lal15g1004 770 MobiDBLite consensus disorder prediction 112 132 - -
Lal15g1004 770 MobiDBLite consensus disorder prediction 102 170 - -
Lal15g1004 770 PANTHER VIN3-LIKE PROTEIN 1 119 766 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1004 Lal-Chr15 8062644 8067776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1004 174 760 PHD Gene Family AT3G24440 48.061 1.11e-168 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1004 - - gsj:114418583 1098.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1027 16 6846707 6856360 Lal15g1004 15 8062644 8067776 LSH
Lal15g1004 15 8062644 8067776 Lal23g0632 23 9056035 9065639 LSH
Lal15g1004 15 8062644 8067776 Lal8g0408 8 2756350 2767010 PCT
Lal8g0408 8 2756350 2767010 Lal15g1004 15 8062644 8067776 PCT