Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0993 ATGACCACCAATATCCCAATTCCTTTTAGGTTTTATATCCATTTCAATGGTGTTTCGTCAGAATCGTTTTTCAAGGAAAATTTTCTCCCAAAACCAAGTCCTTCTCCTGTATGTGGAAAAGTGACACCAAAGTCAACCAACATTTATAAAGGTGTTAGACTTAGGAGATTGGGAAGGTTTTCAGCTGAGATTAGAGACCCAATTCGTAAGGTTAAAGTGTGGATTGGTACTTTTGATACTGAACTTGAAGCTGCTGAGGCATATGCCAAAAAGCAGAATGAGTTCAAGGAGGCTCTACAAAGTGGGAATGCAACTAATTCATAG 324 0.3858 MTTNIPIPFRFYIHFNGVSSESFFKENFLPKPSPSPVCGKVTPKSTNIYKGVRLRRLGRFSAEIRDPIRKVKVWIGTFDTELEAAEAYAKKQNEFKEALQSGNATNS 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0993 107 SMART rav1_2 48 102 IPR001471 GO:0003700|GO:0006355
Lal15g0993 107 SUPERFAMILY DNA-binding domain 48 96 IPR016177 GO:0003677
Lal15g0993 107 PANTHER DNA-BINDING DOMAIN 42 99 IPR044808 GO:0003700|GO:0009873
Lal15g0993 107 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119-LIKE 42 99 - -
Lal15g0993 107 Gene3D AP2/ERF domain 48 106 IPR036955 GO:0003700|GO:0006355
Lal15g0993 107 Pfam AP2 domain 49 88 IPR001471 GO:0003700|GO:0006355
Lal15g0993 107 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Lal15g0993 107 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Lal15g0993 107 ProSiteProfiles AP2/ERF domain profile. 48 107 IPR001471 GO:0003700|GO:0006355
Lal15g0993 107 CDD AP2 48 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0993 Lal-Chr15 7957602 7958668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0993 49 103 AP2-EREBP Transcription Factor Family AT1G28370 56.364 4.10e-15 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal15g0993 AP2 1.6e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0993 - - lang:109341581 130.954