Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0966 ATGGCAGAAGTTGAGGGTGATGTGGCAGCAGCAATTGGTCAGGTACCAAAGAAGAGAACATTCAAGAAGTTTAGTTTCAGAGGAGTTGATTTGGATGCACTTCTTGATATGTCAAAGGACGAACTTGCTAAGCTATTCAGTGCACGTGCTCGTAGAAGGTTCAACAGAGGTATCGGTCATAAGCCTATGGCTTTGATTAAGAAGCTTCGGAAGGCTAAAAGGGAAGCACCAGCAGGTGAGAAGCCGGAGCCAGTGCGCACCCACCTCCGTAACATGATTATTGTACCTGAGATGATTGGAAGCATCATCGGTGTGTACAATGGCAAAACATTCAACCAGGTTGAAATTAAACCCGAGATGATTGGCCATTACCTTGCTGAGTTCTCAATTTCATACAAGCCTGTTAAGCACGGTAGACCTGGTATTGGTGCCACTCACTCATCCAGGTTTATCCCTCTTAAGTGA 465 0.4538 MAEVEGDVAAAIGQVPKKRTFKKFSFRGVDLDALLDMSKDELAKLFSARARRRFNRGIGHKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0966 154 Hamap 30S ribosomal protein S19 [rpsS]. 50 143 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lal15g0966 154 PANTHER BNAA03G55820D PROTEIN 5 154 - -
Lal15g0966 154 SUPERFAMILY Ribosomal protein S19 60 138 IPR023575 GO:0003735|GO:0005840|GO:0006412
Lal15g0966 154 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 10 154 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lal15g0966 154 Pfam Ribosomal protein S19 52 137 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lal15g0966 154 ProSitePatterns Ribosomal protein S19 signature. 107 131 IPR020934 GO:0003723
Lal15g0966 154 TIGRFAM uS19_arch: ribosomal protein uS19 21 154 IPR005713 GO:0003735|GO:0006412|GO:0015935
Lal15g0966 154 Gene3D 30s Ribosomal Protein S19; Chain A 12 154 IPR023575 GO:0003735|GO:0005840|GO:0006412
Lal15g0966 154 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 5 154 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lal15g0966 154 PRINTS Ribosomal protein S19 family signature 87 106 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lal15g0966 154 PRINTS Ribosomal protein S19 family signature 107 119 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lal15g0966 154 PRINTS Ribosomal protein S19 family signature 119 134 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0966 Lal-Chr15 7586329 7588021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0966 6 154 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 83.221 4.43e-88 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0966 K02958 - gmx:100777379 277.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0966 15 7586329 7588021 Lal23g0652 23 9227309 9229040 LSH