LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal15g0958	ATGGCCGAACGTGGTGGTGCCGGCGAACGCGGAGGTTTCGGGCGAGGCTTCGGTGACAGAGGCCGCGGAGGTCGCGGTGACAGAGGCCGAGGAGGCCGCCGCAGAGGTCCCCGTCGCGAAGAAGAGGAAAAATGGGTCCCAGTAACCAAACTTGGCCGTCTCGTAAAAGACGGTAAAATCCGATCCCTCGAACAAATCTACCTTCACTCACTCCCAATCAAGGAACACCAAATCATCGATACCCTTGTGGGGCCCTCACTCAAAGATGAGGTCATGAAAATTATGCCGGTTCAGAAACAAACTCGGGCCGGTCAACGAACCCGGTTCAAGGCTTTTGTTGTTGTTGGTGACAACAACGGCCACGTTGGACTCGGTGTTAAGTGCAGTAAGGAGGTTGCAACCGCTATTCGCGGTGCTATTATTCTTGCGAAGCTTTCGGTGATTCCGGTGAGGAGAGGGTATTGGGGAAATAAGATTGGAAAGCCTCACACTGTTCCTTGCAAGGTTACCGGAAAGTGTGGTTCAGTTACTGTGAGAATGGTTCCAGCTCCGCGTGGTTCAGGTATTGTTGCTGCTAGGGTTCCTAAGAAGGTGCTTCAATTTGCTGGGATTGATGATGTTTTTACTTCTTCTAGGGGATCCACTAAGACTCTTGGAAATTTTGTTAAGGCTACCTTTGACTGTCTTCTGAAAACCTATGGTTTCCTAACACCCGAGTTCTGGAAGGAGACTCGTTTCTCTAAATCTCCATTCCAAGAGTACACAGATCTTTTGGCAAGGCCTACAACGAAGGCTCTGATCCTCGAGCAAGAGGAAAAAACTGTGGAAGCTTGA	834	0.5024	MAERGGAGERGGFGRGFGDRGRGGRGDRGRGGRRRGPRREEEEKWVPVTKLGRLVKDGKIRSLEQIYLHSLPIKEHQIIDTLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKETRFSKSPFQEYTDLLARPTTKALILEQEEKTVEA	277

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal15g0958	277	Pfam	Ribosomal protein S5, C-terminal domain	171	243	IPR005324	GO:0003735\|GO:0005840\|GO:0006412
	Lal15g0958	277	Gene3D	-	150	243	IPR014721	-
	Lal15g0958	277	Pfam	Ribosomal protein S5, N-terminal domain	87	151	IPR013810	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Lal15g0958	277	PANTHER	RIBOSOMAL S SUBUNIT	1	272	IPR000851	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Lal15g0958	277	MobiDBLite	consensus disorder prediction	1	43	-	-
	Lal15g0958	277	ProSitePatterns	Ribosomal protein S5 signature.	104	136	IPR018192	-
	Lal15g0958	277	SUPERFAMILY	Ribosomal protein S5 domain 2-like	163	243	IPR020568	-
	Lal15g0958	277	ProSiteProfiles	S5 double stranded RNA-binding domain profile.	87	150	IPR013810	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Lal15g0958	277	PANTHER	40S RIBOSOMAL PROTEIN S2-1-RELATED	1	272	-	-
	Lal15g0958	277	Gene3D	-	44	149	-	-
	Lal15g0958	277	SUPERFAMILY	dsRNA-binding domain-like	83	152	-	-
	Lal15g0958	277	TIGRFAM	uS5_euk_arch: ribosomal protein uS5	40	247	IPR005711	GO:0003735\|GO:0006412\|GO:0015935

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal15g0958	Lal-Chr15	7471230	7473096	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal15g0958	41	261	Cytoplasmic Ribosomal Protein Gene Family	AT3G57490	92.308	1.71e-152	425

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal15g0958	K02981		-	gmx:100809096	464.151

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal16g0981	16	6522262	6530592	Lal15g0958	15	7471230	7473096	LSH
	Lal15g0958	15	7471230	7473096	Lal23g0660	23	9316574	9318440	LSH