Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0929 ATGCGCACCACCACCACCACCTTCGCCGCCGCCAGCCGGCTCGGATCGTGTTCGGGTCAGGCTCGGGCTCGTGTGGATGACCAGACAGGGCAAACAGTTGCAATTAAGAAAATTTGGATTGGCAAGCAAAAGGAAGGGGTAAATTTTACGGCTCTTAGAGAAGTTAAAATGCTTAAAGAGCTGAAAGATCAGAACATTATTGAGTTGATTGATACATTCCTACATAAAAGGAATTTGCATCTTGTGTTTGAGTTCATGGAGACAGACCTTGAAGCTGTCATTAAAGACCGAAATATCTTTCTTTCACCGGCTGATACGAAATCTTACCTTCAAATGATGCTAAAAGGTCTTGCTTATTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAATAATTTGTTAATAGGACCTAATGGACAGTTGAAACTTGGAGATTTTGGTTCAGCACGGATATTTGGAAGCCCAGATAGAAGGTTCACTCATCAGGTGTTTGCTCGGTGGTATAGAGCTCCTGAGCTTTTATTTGGTTCCAAGCAATATGGTTCAGGGGTAGATGTTTGGGCTTCAGCTTGTATATTTGCTGAACTTCTTCTTGGTCGACCCTTTCTGCAGGGTTCAAGTGATATTGATCAATTAGGAAAGATTTTTTCAGCATTTGGGACTCCAGCTCCGTCTCAGTGGCCTGATATTGTAAACCTTCCTGATTATGTCGAATACCAATATGTTCCTGCCCCTCCTTTGCGTTCATTATTTTCAATGGCAAGTGATGATGCTTTAGATTTGCTGTCAAAGATGTTCACATACGATCTGAAAGCTCGAATTTCAGTGCAGCAGGCACTAGAGCACAGGTACTTCTTTTCTGCACCACTGCCTACAGTTTCCTGA 891 0.4287 MRTTTTTFAAASRLGSCSGQARARVDDQTGQTVAIKKIWIGKQKEGVNFTALREVKMLKELKDQNIIELIDTFLHKRNLHLVFEFMETDLEAVIKDRNIFLSPADTKSYLQMMLKGLAYCHKKWVLHRDMKPNNLLIGPNGQLKLGDFGSARIFGSPDRRFTHQVFARWYRAPELLFGSKQYGSGVDVWASACIFAELLLGRPFLQGSSDIDQLGKIFSAFGTPAPSQWPDIVNLPDYVEYQYVPAPPLRSLFSMASDDALDLLSKMFTYDLKARISVQQALEHRYFFSAPLPTVS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0929 296 SUPERFAMILY Protein kinase-like (PK-like) 22 293 IPR011009 -
Lal15g0929 296 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Lal15g0929 296 SMART serkin_6 8 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal15g0929 296 Gene3D Phosphorylase Kinase; domain 1 21 87 - -
Lal15g0929 296 PANTHER CELL DIVISION PROTEIN KINASE 24 294 - -
Lal15g0929 296 Gene3D Transferase(Phosphotransferase) domain 1 88 294 - -
Lal15g0929 296 ProSiteProfiles Protein kinase domain profile. 8 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal15g0929 296 CDD STKc_CDK7 26 294 IPR037770 GO:0005675|GO:0008353|GO:0070985
Lal15g0929 296 PANTHER CYCLIN-DEPENDENT KINASE D-2 24 294 - -
Lal15g0929 296 Pfam Protein kinase domain 18 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0929 Lal-Chr15 7129172 7134846 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0929 25 294 Core Cell Cycle Gene Families AT1G18040 80.370 3.29e-162 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Lal15g0929 Pkinase 1.8e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0929 K02202 - mnt:21388634 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0929 15 7129172 7134846 Lal15g0929 15 7129172 7134846 ECH
Lal15g0929 15 7129172 7134846 Lal8g0459 8 3053725 3057864 PCT
Lal15g0929 15 7129172 7134846 Lal25g0470 25 3244175 3250403 PCT
Lal15g0929 15 7129172 7134846 Lal10g0961 10 16922295 16925288 PCT
Lal8g0459 8 3053725 3057864 Lal15g0929 15 7129172 7134846 PCT
Lal25g0470 25 3244175 3250403 Lal15g0929 15 7129172 7134846 PCT
Lal10g0961 10 16922295 16925288 Lal15g0929 15 7129172 7134846 PCT