Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0927 ATGGATATTGAGGAGGATATCCGTTCCTTACAGCTCGACTCAGCAGAAGAAAATAATGGGCTGATAAATCTGGAGGATGGAAAGCCAGAAGTTGATAAATCTGATAAGACGGATGAAGATCCAAAGCAGGATGTTCAACCACAGCCTGTCAAAGCTGATGAGCCAAAAGTAAAAGATAAGGAAATTCCTCATGTGCAAGATGAAAAAGATGACCTGGAGTTGAAGAAAAGGCACGTGAATGTTGTGTTCATTGGTCATGTCGATGCTGGTAAGTCTACAACTGGAGGCCAGATACTTTTCCTCAGTGGTCAGGTTGATGAACGGACTATCCAAAAATATGAGAAAGAAGCCAAGGACAAAAGTCGAGAAAGCTGGTATATGGCTTATATAATGGACACAAATGAAGAAGAGAGGGCAAAGGGGAAAACCGTTGAAGTTGGAAGAGCACATTTTGAGACAGAGAAAACAAGGTTCACAATTTTGGATGCCCCTGGTCACAAAAGCTATGTTCCTAACATGATCAGTGGTGCATCTCAAGCTGATATTGGAGTGTTGGTAATTTCTGCCCGGAAGGGAGAATTTGAAACTGGATATGAGAAAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACATTGGGTGTGGCTAAGTTACTTGTTGTTGTTAATAAAATGGATGAGCCTACAGTGCAGTGGTCAAAAGAAAGGTATGCTGAAATTGAGTCAAAGATGATTCCATTTCTGAAGCAGTCAGGATACAATGTGAAGAAAGATCCTGAAAACAACCTTTCTGCTTCTGGGGGTAAGGCTGCATACATCTACCCTTCCCGAACCCTACTAAATGTCCAATTTTTACCAATATCTGGATTGAATGGTGCGAACCTACAAACTAGAATGGATAAAAGCATTTGTCCATGGTGGGACGGTCCTTGCTTATTTGAAGCCCTTGATTCTGTTGAACTTCCAGAGCGGGATCCCAAAGCTGCTTTCAGGTTGCCTATAATTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTGGAATCTGGTACTGTTCGTGAGGGGGATTCTTTGTTGGTCATGCCAAATAAGGATCATGTAAAAGTTGTTGCGATATATATTGATGAAGATCGGGTTAAACGTGCTGGACCTGGAGAAAATTTACGGATTAGATTATCTGGTGTTGAAGAAGAAGACATATTATCTGGGTTTGTCCTGTCTTGTGTTGAAAGTCCAATACCAGCTGTTACCGAGTTTGTTGCTCAGTTGCAGATCCTTGAATTGCTAGACAATGCTATTTTTACTGCTGGGTACAAGGCTGTTCTGCACGTTCACTCGGTAGTTGAAGAATGCGAGATTGTTGAGCTCTTGCATCAAATTGATCCAAAGACAAGGAAACCTATGAAAAAGAAAGTTCTCTTTGTGAAGAGTGGTGCTGGTATTGTCTGTCGTGTTCAGGTTAGCAACACAATATGCGTTGAGACATTCTCTAGTTTTCCACAACTTGGGAGGTTTACTCTTCGCACTGAAGGGAAAACTGTTGCAGTGGGAAAAGTTACTAAAATCTGA 1578 0.4157 MDIEEDIRSLQLDSAEENNGLINLEDGKPEVDKSDKTDEDPKQDVQPQPVKADEPKVKDKEIPHVQDEKDDLELKKRHVNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERAKGKTVEVGRAHFETEKTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYEKGGQTREHVQLAKTLGVAKLLVVVNKMDEPTVQWSKERYAEIESKMIPFLKQSGYNVKKDPENNLSASGGKAAYIYPSRTLLNVQFLPISGLNGANLQTRMDKSICPWWDGPCLFEALDSVELPERDPKAAFRLPIIDKFKDMGTVVMGKVESGTVREGDSLLVMPNKDHVKVVAIYIDEDRVKRAGPGENLRIRLSGVEEEDILSGFVLSCVESPIPAVTEFVAQLQILELLDNAIFTAGYKAVLHVHSVVEECEIVELLHQIDPKTRKPMKKKVLFVKSGAGIVCRVQVSNTICVETFSSFPQLGRFTLRTEGKTVAVGKVTKI 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0927 525 Gene3D Translation factors 328 412 - -
Lal15g0927 525 SUPERFAMILY Translation proteins 322 415 IPR009000 -
Lal15g0927 525 Gene3D Translation factors 418 525 - -
Lal15g0927 525 PANTHER TRANSLATION FACTOR 280 519 - -
Lal15g0927 525 PANTHER TRANSLATION FACTOR 66 259 - -
Lal15g0927 525 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 419 525 IPR009001 -
Lal15g0927 525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 334 IPR027417 -
Lal15g0927 525 Pfam Elongation factor Tu domain 2 343 409 IPR004161 GO:0005525
Lal15g0927 525 MobiDBLite consensus disorder prediction 1 69 - -
Lal15g0927 525 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 76 328 IPR000795 GO:0003924|GO:0005525
Lal15g0927 525 Pfam Elongation factor Tu C-terminal domain 416 525 IPR004160 -
Lal15g0927 525 CDD eRF3_C_III 417 525 - -
Lal15g0927 525 CDD EF1_alpha 80 324 - -
Lal15g0927 525 Pfam Elongation factor Tu GTP binding domain 76 301 IPR000795 GO:0003924|GO:0005525
Lal15g0927 525 MobiDBLite consensus disorder prediction 26 69 - -
Lal15g0927 525 Gene3D - 57 324 IPR027417 -
Lal15g0927 525 CDD eRF3_II 331 409 - -
Lal15g0927 525 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 132 147 IPR031157 -
Lal15g0927 525 PRINTS GTP-binding elongation factor signature 80 93 IPR000795 GO:0003924|GO:0005525
Lal15g0927 525 PRINTS GTP-binding elongation factor signature 139 147 IPR000795 GO:0003924|GO:0005525
Lal15g0927 525 PRINTS GTP-binding elongation factor signature 159 169 IPR000795 GO:0003924|GO:0005525
Lal15g0927 525 PRINTS GTP-binding elongation factor signature 175 186 IPR000795 GO:0003924|GO:0005525
Lal15g0927 525 PRINTS GTP-binding elongation factor signature 219 228 IPR000795 GO:0003924|GO:0005525
Lal15g0927 525 PANTHER BNAA06G12300D PROTEIN 66 259 - -
Lal15g0927 525 PANTHER BNAA06G12300D PROTEIN 280 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0927 Lal-Chr15 7108311 7116695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0927 76 525 Eukaryotic Initiation Factors Gene Family AT5G60390 35.762 3.48e-92 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0927 K03267 - gmx:100784412 865.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0927 15 7108311 7116695 Lal15g0927 15 7108311 7116695 ECH
Lal16g0958 16 6360785 6369693 Lal15g0927 15 7108311 7116695 LSH
Lal15g0927 15 7108311 7116695 Lal23g0685 23 9534327 9544340 LSH