Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0896 ATGGAGTATGCAAGTAGTGTAGGAGGAAAATCTGGGTCCTATTCTCCTGCAGGACCTGATAATCATAACCACAATGGTTCAAATATTCAAAGGAGAAATAGACGCTATCTTCGTCATACTTCTGAACAAATCCAAAGGCTTGAATCATTGTTCAATGAGTGTCCGCATCCAGATGAAAAACAAAGGGCACAACTAAGCAGAGAACTAGGACTTGCACCTACACAGATAAAGTTTTGGTTCCAAAATCGTAGGACCCAGATGAAGGTCCAACATGAAAGGAAAGATAATTCAACCCTTCGAGCAGAGAATGACAAGATACGCTACGAGAATATTGCAATTAAAGAGGCCTTGAAAAATTGTATTTGCCCTAATTGTGGTCCACCTCTTCTTAATGAACAAAATTATTTTGATGACCAAAAGATGAGATTAGAGAATCTCCATCTCAAAGAAGAGCTTGATAGAGTATCAAGTATTGCATCTAAGTACATTGGAAGACCAATTTCTCAACTTCCTTCAATTCCACCTATTCATATATCCCCTCTAGATTTGTCTATGGGGAGTAATTTTGGAACCCAAGGATTGCTTGGTGTTGGTGCTAGAGTTGGTGCTGGTGTTGGTTCTTCTCTTAATCTTGATCTTCTTCAAGGGACAACTTCAAATTCTATGCCAATGTTGCCTTATCAACCTGGTTCTATTTCAGAAATGGATAAGTCCCTTATGTCAACTATTTCAACCAATGCCTTTGAAGAATTTCTCAGGCTCTTTGACACAAATGAACCCTTATGGGTCAAGTCCATCATTAATGGCAAAGAGTTTCTTAATTTGGAGACCTATGAAAGAATGTTCCCTAAGGAAAATACTCGCCTCAAGAGTCCTAATGTTAGCGTTGAATCGTCAAGAGATTCAGCTGTTGTTATGATGAGTAGCTCAAGGTTGGCTGAAATGTTCGTGGATGCAAATAAGTGGAAGGAACTTTTTGCTACTATTGTTTCAACTGCTAGGACTATTGAAGTTATATCCTCAGGCATCATGGGTGGTAACAACGGTTCTTTGCAGTTGATGTATGAAGAGTTGCAAGTTCTGTCTCCTTATGTCTCTACTAGAGAATTCTACTTCCTTCGCTATTCGCGACAGATTGATCAAGGAACATGGGCAATAGTTGATGTTTCATATGATTTTCCACAGAACCAGTTTTCTATGCAACTTCGCTCTCACCGTTTTCCTTCTGGTTGTTTAATTCAAGACTTGCCTAATGGCCAATCCAAGGTTACATGGATTGAACATGTAGAGGTTGAAGACAAAACTCCACCCCATAGGTTTTTCAAAAATATAATATATAGTGGATTAGCATTTGGTGCAGAAAGATGGCTTGCTACACTTCAAAGGATTTGTGAAAGAATTGCTTGTCTAATGGTTACTTCCAATTCTACCCATGATGTTGGAGGAGTTATAACATCTTCTGAAGGAAAGAGGAGCATGATGATACTTTCTCAAAAGATGGTTACAAATTTCTGTGCCAATGTTGGTACATCAAATGGCCAAAAATGGACCACAGTGTCAGGGTTGGATGAGGTTGTATTCAGAGTCACTGTCCATAAGAGCACAAATCCTGGTCAATCTAATGGTGCTGTTCTAAGTGCTGCCACTACAATTCGGCTCCCAATCCCTCCAAACATTGTGTTCAGTTTCTTTAAGGATGGAAGAAATAGACCTAAGTGGGATGTTCTTGCCAATGGTGTTCCAATGCAAGAGGTTGCACACATTCCATGTGGTTCTCACCCCAGTAACTGCATATCAATTCTTCAACCTTTCAACACGAATATGAACAATGACATGTTGATACTCCAAGAGAGTTGCATAGATTCATCTGGTGCAATTGTGGTATATTGCCCAGTTGATCTTCCATCCATGAACATAGCAATGAATGGTGAAGACTCTTCATGCATTCCACTACTACCATCTGGATTTTCTATTACACCTGATGGTCAAGATGAACAAGGAGGAGATGGAGCATCAACTAGCTCCAACACAGGAAGGTGTAGTAGTGGTGGTTCATTAATCACTGTTGCACTTCAAATCATGGTGAATAATTTACCATCTGCTAGAGTCAATGTGGAATCAGTAACAAATGTTACTAATCTTCTAAGCAACCTTATTCAGAATATTAAGGCATCCTTTAACTTTCCTAGCTAG 2193 0.394 MEYASSVGGKSGSYSPAGPDNHNHNGSNIQRRNRRYLRHTSEQIQRLESLFNECPHPDEKQRAQLSRELGLAPTQIKFWFQNRRTQMKVQHERKDNSTLRAENDKIRYENIAIKEALKNCICPNCGPPLLNEQNYFDDQKMRLENLHLKEELDRVSSIASKYIGRPISQLPSIPPIHISPLDLSMGSNFGTQGLLGVGARVGAGVGSSLNLDLLQGTTSNSMPMLPYQPGSISEMDKSLMSTISTNAFEEFLRLFDTNEPLWVKSIINGKEFLNLETYERMFPKENTRLKSPNVSVESSRDSAVVMMSSSRLAEMFVDANKWKELFATIVSTARTIEVISSGIMGGNNGSLQLMYEELQVLSPYVSTREFYFLRYSRQIDQGTWAIVDVSYDFPQNQFSMQLRSHRFPSGCLIQDLPNGQSKVTWIEHVEVEDKTPPHRFFKNIIYSGLAFGAERWLATLQRICERIACLMVTSNSTHDVGGVITSSEGKRSMMILSQKMVTNFCANVGTSNGQKWTTVSGLDEVVFRVTVHKSTNPGQSNGAVLSAATTIRLPIPPNIVFSFFKDGRNRPKWDVLANGVPMQEVAHIPCGSHPSNCISILQPFNTNMNNDMLILQESCIDSSGAIVVYCPVDLPSMNIAMNGEDSSCIPLLPSGFSITPDGQDEQGGDGASTSSNTGRCSSGGSLITVALQIMVNNLPSARVNVESVTNVTNLLSNLIQNIKASFNFPS 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0896 730 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG12-RELATED 22 727 - -
Lal15g0896 730 SUPERFAMILY Homeodomain-like 12 89 IPR009057 -
Lal15g0896 730 ProSitePatterns 'Homeobox' domain signature. 65 88 IPR017970 GO:0000981|GO:0006355
Lal15g0896 730 SUPERFAMILY Bet v1-like 488 723 - -
Lal15g0896 730 MobiDBLite consensus disorder prediction 659 680 - -
Lal15g0896 730 ProSiteProfiles START domain profile. 233 469 IPR002913 GO:0008289
Lal15g0896 730 CDD START_ArGLABRA2_like 237 465 - -
Lal15g0896 730 CDD homeodomain 31 91 IPR001356 GO:0003677
Lal15g0896 730 SUPERFAMILY Bet v1-like 234 467 - -
Lal15g0896 730 Gene3D - 19 106 - -
Lal15g0896 730 SMART START_1 242 466 IPR002913 GO:0008289
Lal15g0896 730 Pfam START domain 246 466 IPR002913 GO:0008289
Lal15g0896 730 MobiDBLite consensus disorder prediction 666 680 - -
Lal15g0896 730 SMART HOX_1 31 94 IPR001356 GO:0003677
Lal15g0896 730 MobiDBLite consensus disorder prediction 1 31 - -
Lal15g0896 730 Gene3D - 257 464 IPR023393 -
Lal15g0896 730 ProSiteProfiles 'Homeobox' domain profile. 30 90 IPR001356 GO:0003677
Lal15g0896 730 MobiDBLite consensus disorder prediction 8 26 - -
Lal15g0896 730 Pfam Homeodomain 34 88 IPR001356 GO:0003677
Lal15g0896 730 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 22 727 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0896 Lal-Chr15 6745523 6749358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0896 31 730 Homeobox Transcription Factor Family AT1G73360 57.567 0.0 795
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal15g0896 START 2.1e-43 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0896 K09338 - gmx:100785023 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0913 16 6015043 6018917 Lal15g0896 15 6745523 6749358 LSH
Lal15g0896 15 6745523 6749358 Lal23g0716 23 9803184 9807772 LSH
Lal15g0896 15 6745523 6749358 Lal8g0493 8 3370101 3373345 PCT
Lal15g0896 15 6745523 6749358 Lal25g0506 25 3574847 3578252 PCT
Lal15g0896 15 6745523 6749358 Lal10g0928 10 16672584 16676709 PCT
Lal8g0493 8 3370101 3373345 Lal15g0896 15 6745523 6749358 PCT
Lal25g0506 25 3574847 3578252 Lal15g0896 15 6745523 6749358 PCT
Lal10g0928 10 16672584 16676709 Lal15g0896 15 6745523 6749358 PCT