Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0885 ATGGAACTACACAAATGCAAGCTTTGTTCAAGGTCTTTCTCCAATGGCAGAGCCCTTGGTGGCCACATGAAAGCTCACCTTGCTACCTTACCCATTCCTCCAAAGCCTCAAACTTTCCATCACCCTTTTGAATCTGCTTCATTCTCATATCAATCACAATCATCACAAGAAGAAGAACAACATGTTGTAGCATCACATGAAAAAGCAATGAGTTATGGTTTGAGGGGAAATCCTAAGAGAAGTTTAAGGTATGCAGATCCTGAATTCTCTTTTAGTAATAACAATGGGTTTGTTGTTGTTATTGCTGCTCAAGATAGAGAGAGTGAAAGTGAGTCAAAGAAACCAACTGGTCAAAGATCCAAAAGAAACAGAAAGTCAAGATTGTACAAGAGTTTGGAACAAGAACCTAAGAAACTCAAACCTAGTTTTTTGGAATCACCACCTTTGAGTTCTGTCTCTGACTTTTCACCTGAAGAAGATGTTGCTATGTGCCTTATGATGCTATCAAGGGATAAGTGGGAAAGTAATCTACTATTAGAAGAAGAAGAAGAAGAAGAAGAAGAGATGAAGTTGAAGAAGAAGAGAATTGGTGTGAAGAATGAGTGTGAGAATTGTGGGAAAAAGTTTCGATCTTTTAGAGCATTGGAGAGTCATAGAAGTATATGTTGTAGTAATGAAGGTGATGGTGGAAGAAGTGACAAGATTTTTGAATGCCCTTTTTGTTTTAAGGTCTTTGGTTCAGGCCAAGCACTTGGTGGCCACAAAAGATCACATCTTATGCAAACTTCATCAACATCAATTGCTAATAGTAAAAAAGAGACCTTCATAGATCTCAACTTTCCTGCTCCTATAGAAGGAGAAGATGATCTTAGTATTGTTTCTGATGTCTCTAATGCATAA 900 0.3778 MELHKCKLCSRSFSNGRALGGHMKAHLATLPIPPKPQTFHHPFESASFSYQSQSSQEEEQHVVASHEKAMSYGLRGNPKRSLRYADPEFSFSNNNGFVVVIAAQDRESESESKKPTGQRSKRNRKSRLYKSLEQEPKKLKPSFLESPPLSSVSDFSPEEDVAMCLMMLSRDKWESNLLLEEEEEEEEEMKLKKKRIGVKNECENCGKKFRSFRALESHRSICCSNEGDGGRSDKIFECPFCFKVFGSGQALGGHKRSHLMQTSSTSIANSKKETFIDLNFPAPIEGEDDLSIVSDVSNA 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0885 299 MobiDBLite consensus disorder prediction 105 151 - -
Lal15g0885 299 Pfam C2H2-type zinc finger 201 219 - -
Lal15g0885 299 Pfam C2H2-type zinc finger 4 28 - -
Lal15g0885 299 Pfam C2H2-type zinc finger 236 259 - -
Lal15g0885 299 Gene3D Classic Zinc Finger 175 261 - -
Lal15g0885 299 SUPERFAMILY beta-beta-alpha zinc fingers 201 258 IPR036236 -
Lal15g0885 299 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Lal15g0885 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 236 263 IPR013087 -
Lal15g0885 299 ProSitePatterns Zinc finger C2H2 type domain signature. 238 258 IPR013087 -
Lal15g0885 299 Coils Coil 170 199 - -
Lal15g0885 299 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Lal15g0885 299 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 295 - -
Lal15g0885 299 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 295 IPR044303 GO:0006355
Lal15g0885 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Lal15g0885 299 SMART c2h2final6 4 26 IPR013087 -
Lal15g0885 299 SMART c2h2final6 236 258 IPR013087 -
Lal15g0885 299 SMART c2h2final6 200 220 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0885 Lal-Chr15 6655922 6656821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0885 1 293 C2H2 Transcription Factor Family AT3G60580 34.675 1.89e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal15g0885 zf-C2H2_6 2.2e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0885 - - gmx:100811637 295.434