Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0877 ATGAATGAAAAAGCCTATGTTTCTAGGGAACTTGATGCCAAACACACCAAGATCTTAGAGGGACTTCTTAAGCAGCTAGAAAATAGGGAATGTGCAGACTGCAGGAACAAGGCACCACGATGGGCAAGTGTAAACCTAGGGATTTTCATTTGCATGCAATGTTCAGGAATTCACCGTAGTCTTGGAGTTCATATATCAAAGGTTCGGTCCACAACATTGGATACATGGTTGCCAGATCAAGTTTCTTTCATGCAATTTATGGGCAATGAGAAGTCAAATAAGCACTGGGAGGCAGAATTGCCACCAAATTTTGATAAAAGTAGATTGGGAATTGAGAAGTTTATTTATGCCAAGTATGTGGAGAAAAAATGGGCATCAAAAGGTGCTGCTATACAAGCATTTTCAAAGTCATCTGAAAAAATCTGTAACTTTAATGAGTCACTAGCTTGTGGAGCTAGAAGTGGTATTCCAAAGAACAGTAGGAAACTTTCTCTTGAAGAAAGCGTTCTTGCGATTCACGTGGCGCAAATTCTGCCTCCAGCGACTAGATCTCGAGGGGGTTCTTTAGACATGCAAAAGAAGAATTCACCTCCATTAAGGAGGCCATCTGCATCAGTTGATTTCGATAAGTCCATGGGAAAGAGCAATGGTACTGCCGACTTTTTCAGCTTGCTTTGCATTGACGACGATAAACAGAACTTGTCAACTTTACCTCCTTCAAGCTGGGCTAAATTTGATTGTCTGAGGACTAAGTTTTCAATCAACATAGTTCAGAAGAATAAAGATTAG 789 0.4043 MNEKAYVSRELDAKHTKILEGLLKQLENRECADCRNKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQFMGNEKSNKHWEAELPPNFDKSRLGIEKFIYAKYVEKKWASKGAAIQAFSKSSEKICNFNESLACGARSGIPKNSRKLSLEESVLAIHVAQILPPATRSRGGSLDMQKKNSPPLRRPSASVDFDKSMGKSNGTADFFSLLCIDDDKQNLSTLPPSSWAKFDCLRTKFSINIVQKNKD 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0877 262 MobiDBLite consensus disorder prediction 183 209 - -
Lal15g0877 262 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 253 IPR044520 GO:0005096
Lal15g0877 262 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 138 IPR001164 GO:0005096
Lal15g0877 262 Pfam Putative GTPase activating protein for Arf 17 127 IPR001164 GO:0005096
Lal15g0877 262 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Lal15g0877 262 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Lal15g0877 262 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Lal15g0877 262 SUPERFAMILY ArfGap/RecO-like zinc finger 15 126 IPR037278 -
Lal15g0877 262 CDD ArfGap 19 119 - -
Lal15g0877 262 SMART arf_gap_3 20 129 IPR001164 GO:0005096
Lal15g0877 262 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 1 253 - -
Lal15g0877 262 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0877 Lal-Chr15 6605197 6610339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0877 22 144 C2H2 Transcription Factor Family AT4G21160 42.636 3.35e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0877 K12486 - gmx:100803735 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0877 15 6605197 6610339 Lal25g0514 25 3666629 3672306 PCT
Lal15g0877 15 6605197 6610339 Lal10g0915 10 16560040 16561765 PCT
Lal25g0514 25 3666629 3672306 Lal15g0877 15 6605197 6610339 PCT
Lal10g0915 10 16560040 16561765 Lal15g0877 15 6605197 6610339 PCT