Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0874 ATGATGACCCAAAAATGCTCACATTGCAGCCATAATGGGCACAACTGTCGTACATGTCCGAACCGAGGGGTTAAGTTGTTTGGGGTTCGATTAACTGATGGGTCAATCCGTAAGAGTGCCAGCATGGGCAATCTTTCTCACTATGCTGCATCCAATTCTTCCACTGATCACGCTTTTGCTGATGGTTATGCTTCTGAAGATTTCCTTTCTGGTTCATCTTCTACTTCCCGTCAAAGAAAAAAAGGAGTTCCATGGACTGAGGAAGAACATAGAAGGTTTTTACTTGGATTGCAGAAGCTGGGAAAAGGCGATTGGCGTGGAATTTCAAGAAACTATGTTATATCTAGGACACCAACTCAAGTGGCCAGTCATGCTCAGAAGTATTTCATCAGGCAAAGCAATGTGTCTAGGAGGAAAAGGCGTTCCAGCATGTTTGATATGGTTGCAGATGAAGCAGCTGAAGCTCCAATGGTAGAGCATGATTTCTTGTCTGCTAATCAGTTTGAAGCCGAAACAGAAGGCAATAACCCCTTGCCTGCTCCTCCTACCTTCGATGAAGAGTGCAAATCCACGGTTTCGACTAACTCGAATGATGACGAGCCTGCAGGCCCGGAACCATCAAATCCTGATGATAACTCACAATCATCTTATCCGGTGATGTATCCTGCATACTATTCTCCTTTCTTCCCATTTCCTCTGCCGTATTGGTTAGGATGCAGTCCAGCAGAGCCCGCGAAGAAGGAGGAGACGCATGAAGTGCTGAAGCCAACTGCAGTACATTCTAAAAGCCCTCTCAATGTTGATGAACTTGTTGGCATGTCCAACCTAAGTTTAAGAGACACTACTGGTAACTCTGGCCTCTCTACATTGAAACAAAAACTTCAATAA 888 0.4482 MMTQKCSHCSHNGHNCRTCPNRGVKLFGVRLTDGSIRKSASMGNLSHYAASNSSTDHAFADGYASEDFLSGSSSTSRQRKKGVPWTEEEHRRFLLGLQKLGKGDWRGISRNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSMFDMVADEAAEAPMVEHDFLSANQFEAETEGNNPLPAPPTFDEECKSTVSTNSNDDEPAGPEPSNPDDNSQSSYPVMYPAYYSPFFPFPLPYWLGCSPAEPAKKEETHEVLKPTAVHSKSPLNVDELVGMSNLSLRDTTGNSGLSTLKQKLQ 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0874 295 CDD SANT 84 129 IPR001005 -
Lal15g0874 295 PANTHER BNAC07G34310D PROTEIN 2 284 - -
Lal15g0874 295 SUPERFAMILY Homeodomain-like 78 134 IPR009057 -
Lal15g0874 295 Gene3D - 83 135 - -
Lal15g0874 295 ProSiteProfiles SANT domain profile. 85 133 IPR017884 -
Lal15g0874 295 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 80 132 IPR006447 GO:0003677
Lal15g0874 295 ProSiteProfiles Myb-like domain profile. 77 129 IPR001005 -
Lal15g0874 295 MobiDBLite consensus disorder prediction 170 215 - -
Lal15g0874 295 MobiDBLite consensus disorder prediction 187 215 - -
Lal15g0874 295 Pfam Myb-like DNA-binding domain 84 129 IPR001005 -
Lal15g0874 295 PANTHER TRANSCRIPTION FACTOR KUA1 2 284 - -
Lal15g0874 295 SMART sant 81 131 IPR001005 -
Lal15g0874 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 133 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0874 Lal-Chr15 6569926 6573866 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal15g0874 Myb_DNA-binding 4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0874 - - gmx:778163 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0874 15 6569926 6573866 Lal23g0737 23 9962693 9965716 LSH