Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0871 ATGCATATAGAGGAATTGAAGGGAGGTGAGGTGGTGGAAGAAGGTGGAGAGAGGGGAAAAGTCTCAAGTGTTGTTGTTTCTGATGCAAAAAGGGTTTTAGTTGGAGCGGGGGCTCGTGCTCTTTTTTATCCAACTTTGCTTTACAATGTTGTTAGGAATAAGATTCAGGCCGAGTTTCGATGGTGGGATAAGGTTGATGAGTTCGTATTACTAGGTGCTGTTCCATTCCCCATTCATGTTCCCCGGTTGAAGGAACTTGGAGTTCGTGGGGTCATTACATTGAATGAGCCATATGAGACTTTGGTTCCAACCACATTATATTATGCTCATGGTATTGACCATCTGGTCATTCCTACCAGAGATTACTGTTTTGCTCCATCATTGCACAACATATGCCATGCTGTGAACTTCATACATGAAAATGCATTGTCTGGACGCACTACATATGTTCACTGCAAAGCTGGTCGGGGTCGCAGTACAACAATCGTTATCTGTTATCTGGTTCACTACAAACTGATGACGCCCGATGCTGCATATGCATATGTGAAGTCAATTCGGCCAAGGGTGCTTCTGGCTTCCTCTCAGTGGCAGGCTGTTCAGGAATACTATTGCCACCTTATGGTGAGGAAGGCTGTTGGATGTGTTCCTGCAGCCAATCTATCAGTAAAGACTTCTGAGGCAGCAGCAGAAGCTTCGCCAGATCATGTAATGTTCGATGATAGTTCTGTAGTTGTGATAACGGAATCAGATCTTGAAGGATACGATCCAAGTATTCACTCAGGAGCTATGGCAAGTGAAATATGGACAGATTTGAGTGTTGTTTACCGTACGCGGGTTGTTGGACAGGCAGCATTGGCAAGAATCTCTTGCCTTTGGCTGCGATACGGTACTAACCAGACGATGTCGTCGGAGAAATTGAACAGGGAGAGCAGCTGCACAATCAGAACTGATCACTCGGGAGGAATTAGTGTGGATATCCATGTGTACTGA 990 0.4525 MHIEELKGGEVVEEGGERGKVSSVVVSDAKRVLVGAGARALFYPTLLYNVVRNKIQAEFRWWDKVDEFVLLGAVPFPIHVPRLKELGVRGVITLNEPYETLVPTTLYYAHGIDHLVIPTRDYCFAPSLHNICHAVNFIHENALSGRTTYVHCKAGRGRSTTIVICYLVHYKLMTPDAAYAYVKSIRPRVLLASSQWQAVQEYYCHLMVRKAVGCVPAANLSVKTSEAAAEASPDHVMFDDSSVVVITESDLEGYDPSIHSGAMASEIWTDLSVVYRTRVVGQAALARISCLWLRYGTNQTMSSEKLNRESSCTIRTDHSGGISVDIHVY 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0871 329 Gene3D Protein tyrosine phosphatase superfamily 61 211 IPR029021 -
Lal15g0871 329 ProSiteProfiles Dual specificity protein phosphatase domain profile. 61 208 IPR020422 GO:0006470|GO:0008138
Lal15g0871 329 SMART dsp_5 64 205 IPR020422 GO:0006470|GO:0008138
Lal15g0871 329 CDD PTPMT1 61 203 IPR044596 GO:0004721
Lal15g0871 329 Pfam Dual specificity phosphatase, catalytic domain 105 203 IPR000340 GO:0008138|GO:0016311
Lal15g0871 329 PANTHER - 1 329 - -
Lal15g0871 329 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE DSP8-RELATED 1 329 - -
Lal15g0871 329 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 53 206 IPR029021 -
Lal15g0871 329 ProSitePatterns Tyrosine specific protein phosphatases active site. 150 160 IPR016130 GO:0016311|GO:0016791
Lal15g0871 329 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 129 197 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0871 Lal-Chr15 6547297 6553008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0871 12 329 Protein tyrosine phosphatase (PTP) family AT2G35680 59.146 1.41e-130 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0871 - - gmx:100790413 516.153