Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0870 ATGGCGAACCCAGCTGAAGTATCTGCTTTGAACCGGATCAAACTTCATCTCCTAGGTGAACTTTCTCCACTTGCAATTTCAACTTCAGACCAAAACAAACGTTCTTTTGAATTTCAAGAACCAAACCCTAATTTCTCTCAATCTCAATCCCAATCTTCTTGCTCTTCTGTTTCTCTCGATCATTACTTCGGTGACCTACTTGAAACCGAATTCGACTTTCCCCAATTCGAATTCGAGTCCAAACTCGAAGTAATTGATCATGAAGTTGCAACCCCGAAAACCCTAATTGAGGAGAAGAAACCTCAACTGAGTCGTAAACCGTCGCTGGTTATTTCAGTTCCGAAGAAATCTGAGTGGATCCGATTCGTTGAGCCCGAATCGGAACCGGTTCAAAAGGTTGAACCAGAGGAGAGAAAACACTACAGAGGAGTTCGACAAAGACCATGGGGAAAATTCGCTGCCGAGATCCGCGACCCGAATAAGCGTGGTTCTAGGGTTTGGCTCGGAACGTTCGACACAGCCATAGAAGCTGCAAAAGCTTACGATCGAGCTGCATTTAGGTTTCGTGGATCAAAAGCAATTCTCAATTTTCCACTTGAAGTTGGAGTTACGGCGGAGAACGGTGTCGATGAGAGGAAGCGCCGCCGTGAGGAGACGGAGGAGGAAGTTGAAGAAGTAAATGTGGTGGTGAAGAGAGAGAAAACGATGGAAACGGTAACGGAGGTGAAAGGTGTTAATGAGCTTCCGTTAACGCCTTCTATTTGGACTGGATTTTGGGAAAGTGATGTTAACGGCGTTTTTAATGTTCCGCCGTTGTCGCCGTTATCTCCTATTTCTGCGGTGGGTTATCCACAACTAATGGTTGTTTGA 870 0.4552 MANPAEVSALNRIKLHLLGELSPLAISTSDQNKRSFEFQEPNPNFSQSQSQSSCSSVSLDHYFGDLLETEFDFPQFEFESKLEVIDHEVATPKTLIEEKKPQLSRKPSLVISVPKKSEWIRFVEPESEPVQKVEPEERKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFRFRGSKAILNFPLEVGVTAENGVDERKRRREETEEEVEEVNVVVKREKTMETVTEVKGVNELPLTPSIWTGFWESDVNGVFNVPPLSPLSPISAVGYPQLMVV 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0870 289 Pfam AP2 domain 140 190 IPR001471 GO:0003700|GO:0006355
Lal15g0870 289 SMART rav1_2 140 204 IPR001471 GO:0003700|GO:0006355
Lal15g0870 289 SUPERFAMILY DNA-binding domain 140 200 IPR016177 GO:0003677
Lal15g0870 289 Coils Coil 209 236 - -
Lal15g0870 289 CDD AP2 139 198 IPR001471 GO:0003700|GO:0006355
Lal15g0870 289 Gene3D AP2/ERF domain 139 200 IPR036955 GO:0003700|GO:0006355
Lal15g0870 289 PRINTS Ethylene responsive element binding protein signature 141 152 IPR001471 GO:0003700|GO:0006355
Lal15g0870 289 PRINTS Ethylene responsive element binding protein signature 164 180 IPR001471 GO:0003700|GO:0006355
Lal15g0870 289 ProSiteProfiles AP2/ERF domain profile. 140 198 IPR001471 GO:0003700|GO:0006355
Lal15g0870 289 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 274 - -
Lal15g0870 289 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 3 274 - -
Lal15g0870 289 MobiDBLite consensus disorder prediction 32 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0870 Lal-Chr15 6539692 6540561 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0870 1 289 AP2-EREBP Transcription Factor Family AT5G47230 45.098 3.70e-68 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal15g0870 AP2 2.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0870 K09286 - gmx:100800453 316.235