Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0862 ATGGCGAACCCTTCTTCCTCTTCCTCATCCTCTTCCTCCCAATTCACCTATTCCTCCACTCCCTCCTATTTCCCTATGCCCTTCCACCTCCAACAACCCCCTACCTACGCTCCGGCGCCACCCCCTCCCTCCGCCGTCACCTACTCCTACCCACAACCACCTCCGTCACAATTCCAGCGCGACGCTCAACAACTCTTCCAGCGCGACGCTCAGACAATCACCCCTGAAGCCCTAGAAAACGTGAAAGCCGCAATCGCCAACAGCGAGATCGAGCACAAGACCGAGTCAAAGAAGAAATCCGTACCTCGACGCGCCGCGGGACTCACGTGGGAGGATCCGTCGCTCTCGGAGTGGCCTGAGAATGATCACCGGTTGTTCTGCGGCGATCTTGGGAACGAGGTGAACGACGACGTTTTGTCGAAGGCGTTCGCGAAGTTCCCGTCGTTTAATATGGCGAAGGTGGTGAGGGATAAGAGGTCTGGTAAGACGAAAGGGTATGGGTTTGTGAGTTTTGCTGATCCTGCGGATTTGGCTGTGGCGTTGAAGGAGATGAGTGGGAAGTACGTTGGGAATAGACCGATTAAGCTTTGTAAGAGTAAGTGGAGGGAGAGGATTGATGTTGATGCTATGGAGAAGCAGAAGAAGCAGAGTAAGAAGAAGTCGAAATCGGCTAGGGTTGGTGTTTTGCATTATTGA 696 0.5359 MANPSSSSSSSSSQFTYSSTPSYFPMPFHLQQPPTYAPAPPPPSAVTYSYPQPPPSQFQRDAQQLFQRDAQTITPEALENVKAAIANSEIEHKTESKKKSVPRRAAGLTWEDPSLSEWPENDHRLFCGDLGNEVNDDVLSKAFAKFPSFNMAKVVRDKRSGKTKGYGFVSFADPADLAVALKEMSGKYVGNRPIKLCKSKWRERIDVDAMEKQKKQSKKKSKSARVGVLHY 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0862 231 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 195 IPR000504 GO:0003723
Lal15g0862 231 MobiDBLite consensus disorder prediction 208 231 - -
Lal15g0862 231 MobiDBLite consensus disorder prediction 27 50 - -
Lal15g0862 231 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 201 IPR000504 GO:0003723
Lal15g0862 231 SMART rrm1_1 124 197 IPR000504 GO:0003723
Lal15g0862 231 MobiDBLite consensus disorder prediction 23 58 - -
Lal15g0862 231 Gene3D - 57 197 IPR012677 -
Lal15g0862 231 SUPERFAMILY RNA-binding domain, RBD 107 202 IPR035979 GO:0003676
Lal15g0862 231 MobiDBLite consensus disorder prediction 216 231 - -
Lal15g0862 231 PANTHER RNA-BINDING PROTEIN 42-LIKE 35 230 - -
Lal15g0862 231 CDD RRM_RBM42 117 199 IPR034215 -
Lal15g0862 231 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 35 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0862 Lal-Chr15 6465099 6467554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0862 73 203 Eukaryotic Initiation Factors Gene Family AT1G71770 24.265 6.39e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0862 K25079 - han:110936572 303.138