Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0859 ATGAATTTGGCATCCTTGCCATTTGTTTATGGTGTCTGTGGAATAGGGTTGGCCATGGAGGAAAGGTATGAGCCATTGAAGGAACTTGGTTCTGGAAATTTTGGAGTTGCAAGGTTGGCCAAAGATAAGAATACTGGAGAACTTGTTGCAGTCAAATACATAGAAAGAGGAAAAAAGATTGATGAGAATGTTCAGAGGGAGATAATTAACCACAGATCTTTAAGGCATCCAAATATTGTCAGGTTCAAAGAGGCAAGAGTCTTGCTGACCCCTTCTCATTTAGCTATTGTCTTGGAGTATGCTTCAGGTGGTGAACTCTTTGAAAGGATATGCACCGCCGGTCGATTTAGTGAAGATGAGGCAAGATATTTCTTCCAGCAGCTAATATCCGGAGTTAGCTACTGCCATTCAATGGAAATTTGTCATAGAGATCTGAAATTAGAAAACACTCTCTTGGACGGAAATCCATCTCCTCGGCTTAAAATTTGTGACTTCGGTTACTCCAAGTCTGCTATACTGCATTCTCAACCTAAATCAACAGTTGGAACTCCTGCATATATTGCTCCAGAGGTTCTGTCACGAAAGCAGTATGATGGAAAGATTGCAGATGTTTGGTCATGTGGTGTGACTCTGTATGTCATGTTAGTAGGTGCATACCCTTTTGAGGATCCTGAAGATCCTAGAAATTTCAGAAAGACTATTGGGCGAATAATAGGTGTTCAGTACTCCATCCCAGACTATGTACGTGTATCTGCAGAGTGTAGGAATATTCTCTCTCGTATCTTCGTTGCCGATCCCGCGAAGAGGGTCAGTATTCCAGAGATAAAGCAGAACCCTTGGTTTTTGAAGAATTTGCCTAAAGAGATCATTGAAGCCGAAAAAGGTTACGAGGGAATACATAAAGACCAACCAAGCCAGAGTGTGGAAGAAATCATGAGGATCATACAAGAGGCAAAGACACCCGGGCTAGGATCAAAAGCTGGTGATGGTGGCCAAGCTGCCACTGGATCAATGGATGTTGAGGATGATGTTGATGACGAGGAAATCGATGTTAGTGTTGACTACGAAAATGTGTGA 1077 0.4234 MNLASLPFVYGVCGIGLAMEERYEPLKELGSGNFGVARLAKDKNTGELVAVKYIERGKKIDENVQREIINHRSLRHPNIVRFKEARVLLTPSHLAIVLEYASGGELFERICTAGRFSEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGNPSPRLKICDFGYSKSAILHSQPKSTVGTPAYIAPEVLSRKQYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIGRIIGVQYSIPDYVRVSAECRNILSRIFVADPAKRVSIPEIKQNPWFLKNLPKEIIEAEKGYEGIHKDQPSQSVEEIMRIIQEAKTPGLGSKAGDGGQAATGSMDVEDDVDDEEIDVSVDYENV 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0859 358 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Lal15g0859 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Lal15g0859 358 SUPERFAMILY Protein kinase-like (PK-like) 21 287 IPR011009 -
Lal15g0859 358 PANTHER SUCROSE NONFERMENTING 1(SNF1)-RELATED KINASE 21 353 - -
Lal15g0859 358 Gene3D Transferase(Phosphotransferase) domain 1 101 288 - -
Lal15g0859 358 Pfam Protein kinase domain 23 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal15g0859 358 MobiDBLite consensus disorder prediction 319 358 - -
Lal15g0859 358 ProSiteProfiles Protein kinase domain profile. 23 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal15g0859 358 CDD STKc_SnRK2 22 280 - -
Lal15g0859 358 Gene3D Phosphorylase Kinase; domain 1 15 100 - -
Lal15g0859 358 SMART serkin_6 23 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal15g0859 358 MobiDBLite consensus disorder prediction 339 358 - -
Lal15g0859 358 PANTHER SERINE/THREONINE KINASE 21 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0859 Lal-Chr15 6443927 6449138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0859 22 293 CBL-interacting serine-threonine protein kinases AT4G24400 42.553 8.49e-68 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Lal15g0859 Pkinase 8.9e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0859 K14498 - gmx:100782714 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0859 15 6443927 6449138 Lal15g0859 15 6443927 6449138 ECH
Lal16g0874 16 5739429 5743519 Lal15g0859 15 6443927 6449138 LSH
Lal16g0874 16 5739429 5743519 Lal15g0859 15 6443927 6449138 PCT
Lal15g0859 15 6443927 6449138 Lal15g0859 15 6443927 6449138 PCT
Lal15g0859 15 6443927 6449138 Lal16g0874 16 5739429 5743519 PCT