Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0840 ATGGCTGTTCAAGCTCAATATCCATCCAATGTCATTTTTGTAAACAGAAACGGTCAAGAAGGTAATGATTGCTCATTACAACAACCACAATCAAAAGAAGGATATACTCCATACAACAACAACAACAACAACAATGGAAGTGCCAATTCTCGTAAGAGAGGAAGAGAAGCTATTGAAGCCAATACAACACCTAATAATATAATGAATCCATTATTCTCAATGCAATCACATCCTCAACAGCTTATAAACCTTTCTCAACTCCATAACCAACACCAAAATGTGGGTTCTATAGGCTTAGGCTTGTCTTTTGATGGCCAACAACAACAAAGATTACAACTTCAACAACAACAACATGGGAGTCACACATCCTCGTACTTATCTTTATCTTCTGAAGGGTTTTCTTTACAAATAAAACAAGAGAGAGATGAAAATGATCACTTCCTTCATGTCCTGGGAGAGGATTTAAAGAGTACATTGGCGGCCATGAGGCAAAGACACTACCAGGAGCTGCTAGGTGCTGCGGAGGAGGCGGTGGCGCGTAGATTGAGAGAAATGGAAGGTGACGTGGACAAAGCCACTCGTAGAAACGCGGAGCTAGAGGCACGCGCCGCTCAGTTGAGCACGGAGGCGCAGGTGTGGCAGGCAAAAGCAAGGGCGCATGAGGCGGCGGCGATGTCGTTACAAGTCCAACTTCAGCAGACAATGATGGCTGCCGAAGCTGGTAGATGTCACGGTGGCGATGACGGATGTGCCTTGGATGGGGGTCAGGTGGAGGATGCTGAATCAGCTTATATTGACCCGGACAGGGTTGAAGTGATCACGTCTGCGGAGGCGCGTGCAAAATGTAGAGGATGCGGGAAGCGCGTGGCCTCGGTGATGGTGTTGCCGTGTAGACACTTGTGCATGTGTGCAGGATGTGATGCGCATTTTAGAGCGTGTCCAGTTTGCCTTACTCTCAAGGATTCAACCGTTGAAGTCTATCTCTGTTAA 990 0.4677 MAVQAQYPSNVIFVNRNGQEGNDCSLQQPQSKEGYTPYNNNNNNNGSANSRKRGREAIEANTTPNNIMNPLFSMQSHPQQLINLSQLHNQHQNVGSIGLGLSFDGQQQQRLQLQQQQHGSHTSSYLSLSSEGFSLQIKQERDENDHFLHVLGEDLKSTLAAMRQRHYQELLGAAEEAVARRLREMEGDVDKATRRNAELEARAAQLSTEAQVWQAKARAHEAAAMSLQVQLQQTMMAAEAGRCHGGDDGCALDGGQVEDAESAYIDPDRVEVITSAEARAKCRGCGKRVASVMVLPCRHLCMCAGCDAHFRACPVCLTLKDSTVEVYLC 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0840 329 PIRSF SBP1_RNase_bind 1 329 IPR017066 -
Lal15g0840 329 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 328 - -
Lal15g0840 329 MobiDBLite consensus disorder prediction 18 51 - -
Lal15g0840 329 MobiDBLite consensus disorder prediction 18 52 - -
Lal15g0840 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 329 IPR013083 -
Lal15g0840 329 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 328 IPR017066 -
Lal15g0840 329 ProSiteProfiles Zinc finger RING-type profile. 282 316 IPR001841 -
Lal15g0840 329 Coils Coil 175 216 - -
Lal15g0840 329 Pfam Zinc finger, C3HC4 type (RING finger) 280 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0840 Lal-Chr15 6285952 6288421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0840 282 318 Miscellaneous Gene Families AT2G21380 37.838 7.59e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0840 K19042 - gmx:100788924 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0863 16 5661378 5663826 Lal15g0840 15 6285952 6288421 LSH
Lal15g0840 15 6285952 6288421 Lal23g1257 23 13690901 13692975 LSH
Lal15g0840 15 6285952 6288421 Lal23g0763 23 10196134 10198465 LSH
Lal16g0863 16 5661378 5663826 Lal15g0840 15 6285952 6288421 PCT
Lal15g0840 15 6285952 6288421 Lal15g0840 15 6285952 6288421 PCT
Lal15g0840 15 6285952 6288421 Lal23g0763 23 10196134 10198465 PCT
Lal23g1257 23 13690901 13692975 Lal15g0840 15 6285952 6288421 PCT
Lal15g0840 15 6285952 6288421 Lal16g0863 16 5661378 5663826 PCT
Lal15g0840 15 6285952 6288421 Lal23g1257 23 13690901 13692975 PCT
Lal23g0763 23 10196134 10198465 Lal15g0840 15 6285952 6288421 PCT