Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0833 ATGGTTTGCACTGCCAATGATTTACAAGAATGGAAAGATTTTCCTAAGGGACTAAAGGTTCTTCTCCTTGATGGTGACATCAATTCTGCTTCTGAGATAAGTGCAAAACTTCTGAGTATGGACTATAATGTTTCTACATTTTGCAATGAGCACGAAGCCTTGTCCGCAATCTCAAGTGGACCTGAAGACTTCCACATTGCCATAGTGGAGGTGAGTACAAACAATAGCCTTGGAGGTTTCAATTTTCTCGAAAATGTCAAGGACTTGCCAACCATTATGATTTCAAACAACCATTGCTTGAACACCATGATGAAGTGCATAGCGCTTGGTTCAGTTGAGTTCCTAAGCAAACCACTCTGTGAGGACAAGCTCAGAAATATCTGGCAGCATGTGGTTCACAAGGCATTCAATGCTGGGGCAAGTGTTGAATCTGAATCACTAAAACCTGTCAAAGAATCTGTAGTGTCCATGTTGGAGGCCGGAAAAGGCGATGGACAAAATGAAGCTACAATATCAGTTGATTTGGAGAAAGTATCCATGTTTACGGATAATGATCCTGAGCAGTCTGCTGAAAGTGATAAATATCCGGCTCCTTCAACCCCGCAATTGAAACAAGGAGCAAGATTACTGGATGACGGTGATTGCCAAGAGCAGACTGTTTTCTCAACAGAAAAAGAAAGCAGTGAGCTTGATGGAGAATCTAAATCTGTTGAAACAACGTGTGGAAATTTGAATGCTCAAAGTACTTCACAACAAAGGGAATCTGAGAAGATTCCGCATAAGGAAGAAGAGGATGTTGCTGGCCATTCTAAGGGTGAGAGTGGGAATGCTGTTTCTTCACATCCACGTAATATAAAGGTTCAAAGCAAGACCGATAGTAATAGAAAATCTCCAAAAAAAGTCGGTGCTCTCAGTAATTCATGTGAGAAAAAAACTAATCGGAAGAAGATGAAAGTAGATTGGACACCAGAGCTGCACAAAAAATTTGTGAGGGCGGTGGAACAACTAGGCGTTGAACAAGCCATTCCTTCTCGAATATTGGAGCTAATGAAAGTGGAGGACTTAACAAGACATAATGTAGCAAGCCATCTTCAGAAATATAGAATGCACAAGAGACGACTATTGCCTAAGGAACAAGATTGGAAATGGCTAAATCAAAGTGATCCAATGCAAAGGAGCTACTGTTTTCAAAGACCAGTTATGGCCTTTCCTCAATATCATTCTAATCACACCCTTTCTCCGGCTCCTGTGTATCCTATGTGGAGACAGCCTGGCTGTCCAATGCCCGGCATGCAGATTTGGAATTCTCCTGGTTATCCCTTATGGCAGCCTACAGAAAGTTGGAACCGGAAGCCATTTCCCGGGATGCATGCAGATGCATGGGGTTTCCCAGTGTTACCACCTCCACAGACTCATTGCTTTTCCTACCCTCAAAATATGCCTGGACTGCACAATGCTGATGCAGTGGACTCCAAGCTTATCTTACCACAAAATTCCTTTGAACATTATCCGGCAGAGGAAGCTATTGACAAGGTTATGAAGGAGGCACTAAGCAACCCATGGCTACCCTTGCCCTTAGGCCTAAAACCTCCTTGCACAGATAGTATGGTAGCTGAGCTTGCAATGCAAGGCATTTCCAGCATTCCTGGTACCAAGGGTTCTAACCCCAGCCGATGTGACCACTGA 1686 0.4336 MVCTANDLQEWKDFPKGLKVLLLDGDINSASEISAKLLSMDYNVSTFCNEHEALSAISSGPEDFHIAIVEVSTNNSLGGFNFLENVKDLPTIMISNNHCLNTMMKCIALGSVEFLSKPLCEDKLRNIWQHVVHKAFNAGASVESESLKPVKESVVSMLEAGKGDGQNEATISVDLEKVSMFTDNDPEQSAESDKYPAPSTPQLKQGARLLDDGDCQEQTVFSTEKESSELDGESKSVETTCGNLNAQSTSQQRESEKIPHKEEEDVAGHSKGESGNAVSSHPRNIKVQSKTDSNRKSPKKVGALSNSCEKKTNRKKMKVDWTPELHKKFVRAVEQLGVEQAIPSRILELMKVEDLTRHNVASHLQKYRMHKRRLLPKEQDWKWLNQSDPMQRSYCFQRPVMAFPQYHSNHTLSPAPVYPMWRQPGCPMPGMQIWNSPGYPLWQPTESWNRKPFPGMHADAWGFPVLPPPQTHCFSYPQNMPGLHNADAVDSKLILPQNSFEHYPAEEAIDKVMKEALSNPWLPLPLGLKPPCTDSMVAELAMQGISSIPGTKGSNPSRCDH 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0833 561 SUPERFAMILY Homeodomain-like 314 373 IPR009057 -
Lal15g0833 561 MobiDBLite consensus disorder prediction 183 205 - -
Lal15g0833 561 MobiDBLite consensus disorder prediction 234 253 - -
Lal15g0833 561 Gene3D - 312 375 - -
Lal15g0833 561 MobiDBLite consensus disorder prediction 254 270 - -
Lal15g0833 561 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 316 371 IPR006447 GO:0003677
Lal15g0833 561 MobiDBLite consensus disorder prediction 221 315 - -
Lal15g0833 561 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Lal15g0833 561 Gene3D - 18 145 - -
Lal15g0833 561 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 555 IPR044825 GO:0003700|GO:0045893
Lal15g0833 561 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 555 - -
Lal15g0833 561 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 313 372 IPR017930 -
Lal15g0833 561 SUPERFAMILY CheY-like 16 134 IPR011006 -
Lal15g0833 561 SMART REC_2 18 128 IPR001789 GO:0000160
Lal15g0833 561 MobiDBLite consensus disorder prediction 273 287 - -
Lal15g0833 561 Pfam Myb-like DNA-binding domain 319 368 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0833 Lal-Chr15 6183378 6191047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0833 1 551 Response Regulator Gene Family AT4G18020 48.103 2.08e-138 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lal15g0833 Myb_DNA-binding 5.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0833 - - gmx:100784905 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0857 16 5591895 5599185 Lal15g0833 15 6183378 6191047 LSH
Lal15g0833 15 6183378 6191047 Lal23g1264 23 13730884 13737234 LSH
Lal16g0857 16 5591895 5599185 Lal15g0833 15 6183378 6191047 PCT
Lal15g0833 15 6183378 6191047 Lal15g0833 15 6183378 6191047 PCT
Lal23g1264 23 13730884 13737234 Lal15g0833 15 6183378 6191047 PCT
Lal15g0833 15 6183378 6191047 Lal16g0857 16 5591895 5599185 PCT
Lal15g0833 15 6183378 6191047 Lal23g1264 23 13730884 13737234 PCT