LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal15g0827	ATGGGTAGCAATTCAAGGGATAAAAACATGAGATCAAATCGAAGGGCTAGACCATCATCATCATCATCATCATCATCATCAGCTGCTAACCCTGGTTTGGATTTGGATGATCCTGTATCCAAGTCCATTGCTGAATCAGGTTTGCAACCTTTGACACAACCTTTGAACTATGATTCTCTTCTGCAAAATCCGAACCCTAATAATTGTTATAATGAAACTGGGTCGGTTTACTCCACTGAGGAACAATTGGAGGACTTTCTGATGTTAAAATTGGAGTTTGTATACAATGAAGCGATTTCAATGCTTGTTGGTTTGGGTTATAGTGAAAGTGCTTCTTTGAAGGCCGTTTTGAGCAATGGCCATTGTTATGGTGGCAAGGATTTGTTGGGTAATATTATGAGCAACTCCATAAAGGCTTTGAGTAGTTGCAATGGTGATCAAAAAGAGCCTAAGACTGTGTTCTGTGATTTGAAGGAGTTAGAGAAGTATGCTTTGACGGGATTGGTGTGTTTGTTGCAACAACTTAGGCCTAATTTGAGTAAAGGTTATGCATTGTGGTGTTTGCTCATGAGTGATCTTCATATTGGTAGGGCTACCACTATCAAAATTCCAGTGCCTGGTCATGCATACCCTGCTGCCGTTCCTGGTGATCTGGCTTCGGCTGCTTCTGCTGTGGCTTCGGCTGCGGCTGCGGCTGCTTTCGGGGGCCGTCGTAGCAATTCGGCTGGTGGCATGATTGCCCCTGGTCAGTGTCAGTTTCATGGGCATTGGAAGGTTGTAGGAAGTGGCAGCAGTGGTGGCGGCAGCAGCAGCGCCAGTGGCGGCAGCAGCAGCACTGGTGGCGGCAGTGGCGAAGCCCCGGAGATGAATTTTCAGTTGCAGAGGGAAATTGATTTCCCAAAGAGGTTCAATCTTTCACCTTCAATGATGTCTTCATTGAAGAGGAATGTTGCTATGTTTGCTGCTGGTTGTAGGGCGAACTTGAAACAGTTGCAACCATCGACAAAGGGTGTGTCTGGCAGTAGCAATACCGTGTCAAATTTGGCTTTTCCAGCTGTTTCTGTCATGCCGAATGAGAAGTCTGGTGTTGGCCAGTGTCTTGATGACCAAGATATTATCAAAGACCTAGTGAGTAAGTTACATGATCTAAATCTTCATGAGATGGGACTTGTAGCAGAAGATCAGAAGGATCAGGTCATAATCAATCTATTGCATCAGATTAAGGATCTCGAGAAACAGGTCAAGGAGCGACAAGAATGGGCTCAAGAGAAGGCATTGCAAGCAGCTAGAAAGCTAACCAGTGATATGACTGAACTCAAAACCTTACGGAAGGCAAGAGATGAGATTCAGAGGCTGAAGCAAGGGAAACAGCCGCTCGGTGATTCGACCGCGAAGAAATTCTCAGAGGCGGAGAGTGGTTTAAGATGTGCTAGTGTTGAACTGGACCGTGCAAATGCAGTTGTGAGGAAACTAGAGCAAGAGCGTGCAGAAATCAGAGCAGAGATGGAGGCTTCCAAATTAAGTGCATCAGAAACAGCGATAGCTTGCAAGGAAGTTGCTAAAAGGGAGAAGAAGTTGCTGAAGAAGCTTCAGGCTTGGGAGAAACAGAAAGCTAAGCTACAGAAGGAAATTACTGATGAAAAAGAGAAGATAATGCAGACAAAAGAAGAGTTGGATCAGATTGGACAGATTAAAAAGGAAGCTGAGGCTGCTTGCGAACAAGAGAGGGTGCAGAACAACAGTGGTCTGTGCAAAGCTGGCGACACAGGGATGGATCGGCTCCATGGTGAGTGCTTGGGAGCAGGGCCACACTCTTCTCTGGTAGTGGCTGCTAATGAAGAAGTGCGTATTTCATTTGCTGAGAATCTAGCCCATCTCAAGTGGAAGGAGGAACTGAAGGCTAAAGAGGATGCCATTGAACTGGTTGAGGAGGAACGCCGTTCTAAGGAAGCAGATGAGGCCAATAATAAGAGGAAGATTGAGGCTTTACGTGTGAAGATTGAGATAGATTTCCAGCGCTACGAGGATGATGTACGAAGACTTGAGCAGGAGCTTTCGTGTCTTCAAGCAGCTGCTAAGTCCGCTGAGTTGCAGTCAAATGCTTCACCTGAAAGTGGATCTGAGGGTCCAAACACTGAGACAGTTGCTAAGCTGCTTCAAGAATTGGATAATCTGGAGGACTTTTCGGAGACAGATGAAGTCAATGGTGGCAGAGAATGCATCATATGCAAGAAAGATGAAGTCTCCGTTGTTTTCTTGCCGTGTGCACACCAAGTTATGTGTGCCAGTTGCAGCGATATGTATGGAAAATATGGCCAAGCTGCTTGTCCTTGCTGCCGGGTTCCGATCGAAAAGAGAATCCGTGTATTCGGGGCAAGCACTTAG	2385	0.4604	MGSNSRDKNMRSNRRARPSSSSSSSSSAANPGLDLDDPVSKSIAESGLQPLTQPLNYDSLLQNPNPNNCYNETGSVYSTEEQLEDFLMLKLEFVYNEAISMLVGLGYSESASLKAVLSNGHCYGGKDLLGNIMSNSIKALSSCNGDQKEPKTVFCDLKELEKYALTGLVCLLQQLRPNLSKGYALWCLLMSDLHIGRATTIKIPVPGHAYPAAVPGDLASAASAVASAAAAAAFGGRRSNSAGGMIAPGQCQFHGHWKVVGSGSSGGGSSSASGGSSSTGGGSGEAPEMNFQLQREIDFPKRFNLSPSMMSSLKRNVAMFAAGCRANLKQLQPSTKGVSGSSNTVSNLAFPAVSVMPNEKSGVGQCLDDQDIIKDLVSKLHDLNLHEMGLVAEDQKDQVIINLLHQIKDLEKQVKERQEWAQEKALQAARKLTSDMTELKTLRKARDEIQRLKQGKQPLGDSTAKKFSEAESGLRCASVELDRANAVVRKLEQERAEIRAEMEASKLSASETAIACKEVAKREKKLLKKLQAWEKQKAKLQKEITDEKEKIMQTKEELDQIGQIKKEAEAACEQERVQNNSGLCKAGDTGMDRLHGECLGAGPHSSLVVAANEEVRISFAENLAHLKWKEELKAKEDAIELVEEERRSKEADEANNKRKIEALRVKIEIDFQRYEDDVRRLEQELSCLQAAAKSAELQSNASPESGSEGPNTETVAKLLQELDNLEDFSETDEVNGGRECIICKKDEVSVVFLPCAHQVMCASCSDMYGKYGQAACPCCRVPIEKRIRVFGAST	794

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal15g0827	794	Coils	Coil	474	508	-	-
	Lal15g0827	794	MobiDBLite	consensus disorder prediction	1	40	-	-
	Lal15g0827	794	PANTHER	OS05G0141500 PROTEIN	615	793	IPR046934	-
	Lal15g0827	794	PANTHER	OS05G0141500 PROTEIN	1	579	IPR046934	-
	Lal15g0827	794	MobiDBLite	consensus disorder prediction	263	285	-	-
	Lal15g0827	794	Pfam	Family of unknown function (DUF6592)	90	198	IPR046527	-
	Lal15g0827	794	SUPERFAMILY	RING/U-box	718	786	-	-
	Lal15g0827	794	MobiDBLite	consensus disorder prediction	15	31	-	-
	Lal15g0827	794	PANTHER	RING/U-BOX SUPERFAMILY PROTEIN	615	793	-	-
	Lal15g0827	794	PANTHER	RING/U-BOX SUPERFAMILY PROTEIN	1	579	-	-
	Lal15g0827	794	Coils	Coil	625	652	-	-
	Lal15g0827	794	MobiDBLite	consensus disorder prediction	262	287	-	-
	Lal15g0827	794	Pfam	Zinc finger, C3HC4 type (RING finger)	738	785	-	-
	Lal15g0827	794	Coils	Coil	664	698	-	-
	Lal15g0827	794	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	724	791	IPR013083	-
	Lal15g0827	794	ProSiteProfiles	Zinc finger RING-type profile.	740	780	IPR001841	-
	Lal15g0827	794	Coils	Coil	516	571	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal15g0827	Lal-Chr15	6117941	6123586	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal15g0827	740	790	C3H Transcription Factor Family	AT1G73950	47.059	1.23e-07	53.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal15g0827	-		-	adu:107483267	730.709

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal16g0285	16	1700427	1703759	Lal15g0827	15	6117941	6123586	LSH
	Lal15g0827	15	6117941	6123586	Lal23g1268	23	13773186	13776531	LSH
	Lal15g0827	15	6117941	6123586	Lal23g0778	23	10297790	10303809	LSH
	Lal16g0285	16	1700427	1703759	Lal15g0827	15	6117941	6123586	PCT
	Lal15g0827	15	6117941	6123586	Lal15g0827	15	6117941	6123586	PCT
	Lal15g0827	15	6117941	6123586	Lal23g0778	23	10297790	10303809	PCT
	Lal23g1268	23	13773186	13776531	Lal15g0827	15	6117941	6123586	PCT
	Lal15g0827	15	6117941	6123586	Lal16g0285	16	1700427	1703759	PCT
	Lal15g0827	15	6117941	6123586	Lal23g1268	23	13773186	13776531	PCT
	Lal23g0778	23	10297790	10303809	Lal15g0827	15	6117941	6123586	PCT