Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0823 ATGCCTGTCCCACTTGCCCCTTATCCAACACCACCACCTTCAGCAGAAAATGGTGCACAGAGTCAACTTGTATGTTCTGGTTGTAGAAACCTTCTACTCTATCCTGTTGGAGCCACCTCAGTGTGTTGTGCTGTTTGCAATGCAGTCACAGCAGTGCCACCTCATGGCACAGAAATGGCTCAGTTAGTTTGTGGAGGCTGTCATACTTTACTCATGTATACTCGTGGAGCTACAAGTGTGAAATGCTCTTGTTGTCACACGGTTAATCTAGCTTTGGAAGCATCAAATGTGCACTGTAACACGAATCAAGTGGCACATGTCAATTGTGGGAACTGCATGATGCTACTCATGTACCAGTATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTAACATCTGTTGCGGCCTCAGCAAGCACCACTGAGCATAAGTTCAGCACCTAA 450 0.46 MPVPLAPYPTPPPSAENGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPHGTEMAQLVCGGCHTLLMYTRGATSVKCSCCHTVNLALEASNVHCNTNQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVAASASTTEHKFST 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0823 149 Pfam LSD1 zinc finger 25 49 IPR005735 -
Lal15g0823 149 Pfam LSD1 zinc finger 109 133 IPR005735 -
Lal15g0823 149 Pfam LSD1 zinc finger 64 88 IPR005735 -
Lal15g0823 149 PANTHER PROTEIN LOL1 1 146 - -
Lal15g0823 149 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 106 136 IPR005735 -
Lal15g0823 149 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 22 52 IPR005735 -
Lal15g0823 149 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 61 90 IPR005735 -
Lal15g0823 149 PANTHER PROTEIN LSD1 1 146 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0823 Lal-Chr15 6059187 6062280 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lal15g0823 zf-LSD1 9.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0823 - - qsu:112000975 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0849 16 5518220 5520370 Lal15g0823 15 6059187 6062280 LSH
Lal15g0823 15 6059187 6062280 Lal23g1269 23 13779364 13781466 LSH
Lal15g0823 15 6059187 6062280 Lal23g0780 23 10331397 10334787 LSH
Lal16g0849 16 5518220 5520370 Lal15g0823 15 6059187 6062280 PCT
Lal15g0823 15 6059187 6062280 Lal15g0823 15 6059187 6062280 PCT
Lal15g0823 15 6059187 6062280 Lal23g0780 23 10331397 10334787 PCT
Lal23g1269 23 13779364 13781466 Lal15g0823 15 6059187 6062280 PCT
Lal15g0823 15 6059187 6062280 Lal16g0849 16 5518220 5520370 PCT
Lal15g0823 15 6059187 6062280 Lal23g1269 23 13779364 13781466 PCT
Lal23g0780 23 10331397 10334787 Lal15g0823 15 6059187 6062280 PCT