Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0817 ATGGATGATTACAATTTCTTTCCAGAGGAATGCAACATGGACAATTTGTTTGATGTTGATGATGAAGAGTTTCTTTTGCAAGGGAACACAAATAGCAACTCATCCAGCATCACTGAAAATTTGTCACCAAAACTTTCCCCAACATCCTCAATCTCCTCTTTTCAGTCTAAGATTCTGTCTTTAGACAACATCACCACCCAGTTTTATGGGTTTGACTATACCTTAAACCCTCCAATACAAAATGAAACTGTGTCAGTGCCCCATTTGGGAAATGCACATATTCCAGCTCAAACAACAAAAGGGTGTTCAAAAAATCAAAACTTTGGAACAAAAACCATACTTGGTAAGAGATCTGCAACTCATACTCATGATCACATAATGGCTGAGAGAAAGCGAAGAGAGAAACTCAGCCAAAGCTTGATTGCTCTTGCAGCCCTTATTCCTGGTCTAAAGAAGATGGACAAGGCTTCTGTACTAGGAGATGCTATCAAACATGTTAAAGAGCTTAAACAGCGTGTAGCAACTTTGGAAGAAGAAGAAAAAAAGAAGAAGAAAAGGGTGATAGTTCTCAAGGATCCAAATCTGAATGGTGATAATGATGATTCTTCATCATGTGATGATGATGAGAGCATTGAAAATGCAAGTGGCAGTGAACCACTCCTCCAAGTGGAAGCAAGAATATCAGGGCAAGAAGTTCTACTTCGGATCCATTGTCAAAGGCAAAAGGGTCTTCTGGTTAAAATATTGGCACAGATTCAAAGCTTGAACCTCTTTGTTGTCAATAGCAGTGTCTTGCCGTTTGGAAATTCTACTCTTGAGATTACCTTCATTGCTCAGATAGGGGAAGGTTACAATTTGACCATAAAGGATCTTGTAAAGAACATACGCACGACTACATTAAAGTGTACGTCATAA 915 0.3891 MDDYNFFPEECNMDNLFDVDDEEFLLQGNTNSNSSSITENLSPKLSPTSSISSFQSKILSLDNITTQFYGFDYTLNPPIQNETVSVPHLGNAHIPAQTTKGCSKNQNFGTKTILGKRSATHTHDHIMAERKRREKLSQSLIALAALIPGLKKMDKASVLGDAIKHVKELKQRVATLEEEEKKKKKRVIVLKDPNLNGDNDDSSSCDDDESIENASGSEPLLQVEARISGQEVLLRIHCQRQKGLLVKILAQIQSLNLFVVNSSVLPFGNSTLEITFIAQIGEGYNLTIKDLVKNIRTTTLKCTS 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0817 304 Coils Coil 159 186 - -
Lal15g0817 304 MobiDBLite consensus disorder prediction 190 214 - -
Lal15g0817 304 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 169 IPR011598 GO:0046983
Lal15g0817 304 Gene3D - 114 186 IPR036638 GO:0046983
Lal15g0817 304 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 32 302 - -
Lal15g0817 304 PANTHER BHLH TRANSCRIPTION FACTOR 32 302 - -
Lal15g0817 304 SMART finulus 126 175 IPR011598 GO:0046983
Lal15g0817 304 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 185 IPR036638 GO:0046983
Lal15g0817 304 Pfam Helix-loop-helix DNA-binding domain 125 169 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0817 Lal-Chr15 5980345 5984294 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0817 36 298 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.603 5.15e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal15g0817 HLH 5.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0817 - - lang:109330753 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0846 16 5492061 5494268 Lal15g0817 15 5980345 5984294 LSH
Lal15g0817 15 5980345 5984294 Lal23g0784 23 10364282 10368758 LSH