Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0816 ATGACGCAAATTTCATCCACCAAGTACATGCCTGAATTTTTTCAGGGAATGGAGGATCAAACCTTGTTTCATCAATACCCAATGGATTCTTTTGAATACCAGCTTAATGATCTTGACTTCAAACCTTTCTCTGCGTCCAAAGAAAGCTACAATTCCTCTCACAATTACTTTCACTACGAAACTACACAAAACTCTTTCCCTGAAGATCACTACGTTGTTTCCCCAACAAGACCAACCAAGCAACTCAAAACTAATTGGAATGCTTACAACAATGAGTTGAAGAGTTCTAATTTCTCTTCATCCTCACAACTCATTTCTTTTGAGCACTCCAATACTTCTTCTTCAGTTGCTTCCCAGCAATATCACAACCATGACTATGAGGACAAAAGTTTTCATAATTATGATAAACAAGCAAATAAGAGTGCTAACACCACTATGACTATGAGGAACACAACCCAAGCTCAAGATCACGTATTATCTGAAAGAAAAAGAAGGGAAAAGCTCAACGAGAGGTTCGTTGCTCTTTCCGCCATCGTTCCTGGACTCAAGAAGATGGACAAGGCTACTGTGTTGGGAGATGCTATAAAGTATCTGAAACAACTACAAGAAAGGGTGAAGACACTGGAGAAACAAGCAAGTAAAGAAACTGTTGAATCAGCAGTGGTAGTGAAGAGATCTATTATCTTCACAGATGATGATAATAGCTCATATTCTAATGAAAACTTTAACCAAACAATCCCTGAAATGGAAGCAAGAGTTTGTGGTAAAGAGGTACTCATAAGAATCCATTGTGACAAACACAATGGTCGATCAGCTACAATACTCAACGAGTTGGAAAAGTATCATCTCACTATTCAGAGTACCAGCTTTGTGCCCTTTGGGAATAACACTATTGACATAACCATTGTTGCTCAGATGAACAAGGAACACGGCGTGACAGCAAAGGATCTCATAAAATACTTAAGAAAATCTTTGAAGAAGTTAATTTGA 990 0.3808 MTQISSTKYMPEFFQGMEDQTLFHQYPMDSFEYQLNDLDFKPFSASKESYNSSHNYFHYETTQNSFPEDHYVVSPTRPTKQLKTNWNAYNNELKSSNFSSSSQLISFEHSNTSSSVASQQYHNHDYEDKSFHNYDKQANKSANTTMTMRNTTQAQDHVLSERKRREKLNERFVALSAIVPGLKKMDKATVLGDAIKYLKQLQERVKTLEKQASKETVESAVVVKRSIIFTDDDNSSYSNENFNQTIPEMEARVCGKEVLIRIHCDKHNGRSATILNELEKYHLTIQSTSFVPFGNNTIDITIVAQMNKEHGVTAKDLIKYLRKSLKKLI 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0816 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 215 IPR036638 GO:0046983
Lal15g0816 329 SMART finulus 158 207 IPR011598 GO:0046983
Lal15g0816 329 CDD bHLH_AtNAI1_like 154 226 - -
Lal15g0816 329 MobiDBLite consensus disorder prediction 142 163 - -
Lal15g0816 329 Pfam Helix-loop-helix DNA-binding domain 156 202 IPR011598 GO:0046983
Lal15g0816 329 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 1 114 - -
Lal15g0816 329 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 124 327 - -
Lal15g0816 329 Coils Coil 191 218 - -
Lal15g0816 329 PANTHER BHLH TRANSCRIPTION FACTOR 124 327 - -
Lal15g0816 329 PANTHER BHLH TRANSCRIPTION FACTOR 1 114 - -
Lal15g0816 329 Gene3D - 148 215 IPR036638 GO:0046983
Lal15g0816 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0816 Lal-Chr15 5968794 5971856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0816 4 329 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.023 8.72e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal15g0816 HLH 3.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0816 - - gmx:100785572 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0845 16 5478763 5484501 Lal15g0816 15 5968794 5971856 LSH
Lal15g0816 15 5968794 5971856 Lal23g1272 23 13807088 13811050 LSH
Lal16g0845 16 5478763 5484501 Lal15g0816 15 5968794 5971856 PCT
Lal15g0816 15 5968794 5971856 Lal15g0816 15 5968794 5971856 PCT
Lal23g1272 23 13807088 13811050 Lal15g0816 15 5968794 5971856 PCT
Lal15g0816 15 5968794 5971856 Lal16g0845 16 5478763 5484501 PCT
Lal15g0816 15 5968794 5971856 Lal23g1272 23 13807088 13811050 PCT