Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0806 ATGGAAGAGAGAAATGATAATGAGAAGTATGATGAAGTTATGCTACCAGGGTTTAGGTTTCATCCAACTGATGAAGAGCTTGTTGGATTTTACCTCAAGAGAAAGATTCAGCAATGGCCTATGTCTATTGAACTAATCAAGCAACTTGATATCTATAAATATGACCCATGGGATCTTCCAAAGTTAGCCTCAAATGGAGAGAAAGAGTGGTATTTCTACTGTCCCAGAGACAGGAAATACAGGAACAGTGCAAGGCCTAATAGGGTAACAGGAGCTGGGTTCTGGAAAGCTACAGGGACAGATAGACCTATATACTCCTCAGAGGGTTCTAAGTGTATTGGCCTCAAGAAATCTCTTGTGTTCTATAAAGGTAGAGCTGCAAAAGGGGTCAAAACTGATTGGATGATGCATGAGTTCAGGCTACCTTCTCTCACAGACTCATCATATCCCTCAAAGAAGTACATAGACAAGACCATTGCTGCAAATGAATCATGGGCAATATGCAGAATATTCAAGAAAACCAATGCTACAGCTCAAAGAGCTCTTTCTCATTCTTGGGTCTCTCCCTTACATGAAACAATGAGCTCTGACATGCTAACCAATGATCAAAACAGCACTCATTTTTGCTCAATAAGCATGCCATTGACAAAGCAAACTAGCTTAGCCAACCACTTTTGTAACATTAATCACATTGACACACATCACTTAACCACTTCTAGTAGCACTCTTAGTCCTTTAGATTTTGCATCTTATAACAAATCCATTATTAGTCCATTGCTTCAAAGGCCCTTCGATCAATTACCCATTTCAAATGAACACCTTAACACTGGCATAATCTTCTCATCATCTCCTCTTGAAACATCCATAACTAGTTCTAAATCTACAATGGATGTTTCTTCCTTGATGTTTCACATGCAATCTTCTGTGCCAGAAAATTTTAGCTTAACCTCTGAGGGAACAACTACAAACTTTGGTGTGTTGCAAGAGAATAATAATGACTACCCAGTATCATTATTACGTGAGATGCAAGGTACCATTAACAACCAAAACAACAATGTATTGGTGAAGATTCCTAATATAAATGTGCCTCATGTTGATGAACAAGAATTGGAGAAAGTAAGATCCATTGGATTTCAACCTAATTTCAATGTTGGTGATGCATGGAAGTCAAATCTGCTTTGGGATTCATCTTCTTGTCCTTGTGATCATGTATCATCTAGTTATTCCACTACTAAGTGTTATACTTAG 1248 0.3814 MEERNDNEKYDEVMLPGFRFHPTDEELVGFYLKRKIQQWPMSIELIKQLDIYKYDPWDLPKLASNGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLTDSSYPSKKYIDKTIAANESWAICRIFKKTNATAQRALSHSWVSPLHETMSSDMLTNDQNSTHFCSISMPLTKQTSLANHFCNINHIDTHHLTTSSSTLSPLDFASYNKSIISPLLQRPFDQLPISNEHLNTGIIFSSSPLETSITSSKSTMDVSSLMFHMQSSVPENFSLTSEGTTTNFGVLQENNNDYPVSLLREMQGTINNQNNNVLVKIPNINVPHVDEQELEKVRSIGFQPNFNVGDAWKSNLLWDSSSCPCDHVSSSYSTTKCYT 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0806 415 Gene3D NAC domain 23 178 IPR036093 GO:0003677|GO:0006355
Lal15g0806 415 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 413 - -
Lal15g0806 415 PANTHER PROTEIN FEZ ISOFORM X1 1 413 - -
Lal15g0806 415 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
Lal15g0806 415 SUPERFAMILY NAC domain 13 173 IPR036093 GO:0003677|GO:0006355
Lal15g0806 415 ProSiteProfiles NAC domain profile. 14 173 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0806 Lal-Chr15 5862908 5865377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0806 1 328 NAC Transcription Factor Family AT1G26870 55.028 5.67e-115 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal15g0806 NAM 2.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0806 - - gmx:100783995 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0806 15 5862908 5865377 Lal15g0806 15 5862908 5865377 ECH
Lal16g0834 16 5389423 5391568 Lal15g0806 15 5862908 5865377 LSH