Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0804 ATGGACTTGACCCCAACCATAGGCACAGATATTCAAACCCCACCCACCAAACCCAAGTCCTTATCTTTTATCAACGCCACACTCAAACCCCACTCCACCACCACCACCACCGTCCCTCCGCCGTCATCCACGGTGGTTTCCTACAAAGCATGTCTCAAAAACCATGCTGCCAGCATAGGAGGCCATGCACTTGATGGCTGCGGCGAATTCATGCCTTCATCCTCCACTAACCCCACTGACCCCCGCTCTCTTAAATGCGCTGCTTGTGGCTGCCACCGCAACTTCCACCGCCGTGAGCCTCAAGAACAACCACCCAGTACTCCTACTTTCCTGACTTGCTTCTACTCCACCACCCCTTCTTCAGTCACACCCACCGTTCCAGCACGACAACAGCCACTACCACAACTCTCCCACCGTGCCATGACCCCAAGTACTAGCCCAAGCCTCACTTCTAGCCCAAGCCACAGTCATAGCCCCATGTCCTCAACACCCTCTTCACCACCACCACTCTCTCACTTGCCACCTTCTTCATACCCAGCACCCCACATGCTCTTAGCATTTGGCAACAACAATAACAATAATAATGCTTATTCTATTGACCATCAAAACAGAAACTTTCACTCTTCTTCATTGGTGCTAAAGACTGAGACTATTAACCTGGGTTGTAAGAAGAGGTACAGGACCAAGTTCAACCAGGAGCAGAAGGAGAAGATGTATAGCTTCTCTGAGAAATTGGGTTGGAGAATGCAGAAAGGTGATGATGGATCTGTTCAAGAATTCTGTAATGAGATTGGTGTCCCTAGAGGGGTGTTCAAAGTTTGGATGCACAATAATAAGAACACTTCAAGGAAGAAATCAGAAAATGCTAATCCTCAAATTGGAAACAATAATGGTGGCAGTGAAGATGTCAATGGCAATGGTGATGGTATTAACAACTCATTCAACATTAATAGCAACAGCAACAATGATATTCAGAAAAATGAAGATAACTGTGTTGATGTTCATTCACTCATCCCAACAAGTATAGCTCCGAGGAATCAAATTTTTGATATTTTGGATTTAATGGAGTCTTGTACTACTAGATGA 1086 0.4595 MDLTPTIGTDIQTPPTKPKSLSFINATLKPHSTTTTTVPPPSSTVVSYKACLKNHAASIGGHALDGCGEFMPSSSTNPTDPRSLKCAACGCHRNFHRREPQEQPPSTPTFLTCFYSTTPSSVTPTVPARQQPLPQLSHRAMTPSTSPSLTSSPSHSHSPMSSTPSSPPPLSHLPPSSYPAPHMLLAFGNNNNNNNAYSIDHQNRNFHSSSLVLKTETINLGCKKRYRTKFNQEQKEKMYSFSEKLGWRMQKGDDGSVQEFCNEIGVPRGVFKVWMHNNKNTSRKKSENANPQIGNNNGGSEDVNGNGDGINNSFNINSNSNNDIQKNEDNCVDVHSLIPTSIAPRNQIFDILDLMESCTTR 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0804 361 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 48 99 IPR006456 -
Lal15g0804 361 Pfam ZF-HD protein dimerisation region 46 100 IPR006456 -
Lal15g0804 361 MobiDBLite consensus disorder prediction 121 177 - -
Lal15g0804 361 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9 29 290 - -
Lal15g0804 361 MobiDBLite consensus disorder prediction 280 322 - -
Lal15g0804 361 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 223 280 IPR006455 -
Lal15g0804 361 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 29 290 - -
Lal15g0804 361 SUPERFAMILY Homeodomain-like 217 284 IPR009057 -
Lal15g0804 361 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 48 99 IPR006456 -
Lal15g0804 361 Gene3D - 214 284 - -
Lal15g0804 361 MobiDBLite consensus disorder prediction 121 161 - -
Lal15g0804 361 MobiDBLite consensus disorder prediction 284 322 - -
Lal15g0804 361 MobiDBLite consensus disorder prediction 162 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0804 Lal-Chr15 5855523 5856859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0804 5 290 ZF-HD Transcription Factor Family AT5G15210 41.115 4.70e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lal15g0804 ZF-HD_dimer 1.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0804 - - gmx:102660309 295.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0804 15 5855523 5856859 Lal15g0804 15 5855523 5856859 ECH
Lal16g0832 16 5381709 5383127 Lal15g0804 15 5855523 5856859 LSH
Lal15g0804 15 5855523 5856859 Lal23g0800 23 10495642 10497239 LSH